RnoINT0096513 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33614301-33614635:-
Coord C1 exon
chr15:33614509-33614635
Coord A exon
chr15:33614420-33614508
Coord C2 exon
chr15:33614301-33614419
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
AACCTTCATTCTACCTCCAGGCG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCAAACCTGGAGAAAGTGTCCCGGACACTGGAGGACCAGGCCAATGAATACCGGGTGAAGTTGGAAGAAGCCCAGCGCTCCCTCAATGACTTCACCACACAGCGAGCCAAGCTGCAGACAGAGAACG
Seq A exon
GTGGGTGCCCCTGACCATCCCCTCGCCTGCCCCGAGTAGCTTTGGTTTCCCCGCTCCCATGCCCCAAGAAACCTTCATTCTACCTCCAG
Seq C2 exon
GCGAGCTGGCTAGGCAACTGGAAGAAAAGGAGGCACTGATTTCCCAGCTGACCCGGGGCAAGCTCTCCTATACCCAGCAGATGGAGGACCTCAAGAGGCAGCTGGAGGAGGAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(32.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGCCAATGAATACCGG
R:
TGGGTATAGGAGAGCTTGCCC
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]