BtaINT0097341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21368245-21368581:+
Coord C1 exon
chr10:21368245-21368371
Coord A exon
chr10:21368372-21368462
Coord C2 exon
chr10:21368463-21368581
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
ACCCTCCTTCCCACCTGCAGGTG
3' ss Score
13.02
Exon sequences
Seq C1 exon
GCCAACCTGGAGAAGATGTCCCGGACACTGGAGGACCAGGCCAATGAGTACCGGGCGAAGCTAGAAGAGGCCCAGCGCTCCCTCAATGACTTTTCCACCCAGCGAGCCAAGCTGCAGACCGAGAACG
Seq A exon
GTGGGTGCCCCTCACCAGGCCTGTGCCTGCCCCGGGGCAGAGCATCAGTTGCCCCCCTCCCTAGCCCACAAACCCTCCTTCCCACCTGCAG
Seq C2 exon
GTGAGCTGTCCCGGCAGCTGGAGGAAAAGGAGGCACTGATCTCCCAGCTGACCCGAGGGAAGCTGTCCTACACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAAGAGGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=FE(27.5=100),PF0003816=Filament=FE(36.2=100),PF0003816=Filament=PU(2.0=14.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(25.5=100),PF0003816=Filament=FE(33.6=100),PF0003816=Filament=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGATGTCCCGGACA
R:
TGGGAGATCAGTGCCTCCTTT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development