GgaINT0132882 @ galGal3

Intron Retention

Gene

ENSGALG00000013781 | Q90WH5_CHICK

Description

NA

Coordinates

chr19:15420-15767:+

Coord C1 exon

chr19:15420-15546

Coord A exon

chr19:15547-15648

Coord C2 exon

chr19:15649-15767

Length

102 bp

Sequences

Splice sites

5' ss Seq

ACAGTGAGT

5' ss Score

8.34

3' ss Seq

CCCCTCTTTGTGCCCCTTAGGTG

3' ss Score

10.64

Exon sequences

Seq C1 exon

ACCAACCTGGAGAAGATGTGCCGCACCACAGAAGACCAGATGAATGAGCACCGCAGCAAGTTGGAGGAGGCTCAGCGCACTGTCACTGACCTCAGCACCCAGCGAGCCAAGCTCCAGACAGAGAACA

Seq A exon

GTGAGTGTCTCACTCACCTCTCACCCAGCTGCTGGTGTTGGGGACTGTGGGTTGGCTCTGGGGGTCTCTTCAGCAATGATCACCCCTCTTTGTGCCCCTTAG

Seq C2 exon

GTGAGCTCTCAAGGCAGCTGGAGGAGAAGGAAGCTTTCATCAACCAGCTGACGCGAGGGAAACTCACCTACACTCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGCCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000013781:ENSGALT00000040718:27

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=NA C2=0.500

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(12.3=100),PF059116=DUF869=FE(25.8=100),PF0205011=FliJ=PU(42.7=81.4),PF0003816=Filament=PU(34.5=88.4),PF0003816=Filament=PU(5.4=16.3)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(11.4=100),PF059116=DUF869=FE(23.9=100),PF0205011=FliJ=FE(47.6=100),PF0003816=Filament=FE(35.5=100),PF0003816=Filament=FE(30.0=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000039921