GgaINT0127796 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:442047-442498:-
Coord C1 exon
chr18:442372-442498
Coord A exon
chr18:442166-442371
Coord C2 exon
chr18:442047-442165
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTATCTGCAAACTTTCCCAGGTG
3' ss Score
6.41
Exon sequences
Seq C1 exon
GCAAGTCTGGAGAAGACATGCCGAGCATTGGAGGATCAGCTGAGTGAGATTAAGACAAAAGAAGAGGAGCATCAGCGGATGATCAATGACCTCAATGCTCAAAGAGCTCGTCTGCAGACAGAATCAG
Seq A exon
GTGAGATTTTCACAACTCTGATGTGTCATTGTACAACATCAGAGAGTTGGTGTAGAAGGACTTTTCTGTCCTTTGAGGACAAAACTTGTGGAAAAAGACATTAAGTTTCTGTAAGCTCTGCCAAATGCACTGTCTTAGAGCCCTAATTGTCCACAACACTGTCATCAGTGGCAATTAAAGGCCTGTGTATCTGCAAACTTTCCCAG
Seq C2 exon
GTGAATATTCACGACAAGTGGAGGAGAAAGATGCTCTGATATCTCAGCTGTCTCGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCATTTAGAGGAGGAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(26.6=58.1)
A:
NA
C2:
PF0003816=Filament=PD(4.6=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(41.5=100),PF0003816=Filament=PU(11.8=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAGACATGCCGAGC
R:
TCTCCTCCTCTAAATGCCTCTTGA
Band lengths:
236-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]