GgaINT0127796 @ galGal4
Intron Retention
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:437400-437851:-
Coord C1 exon
chr18:437725-437851
Coord A exon
chr18:437519-437724
Coord C2 exon
chr18:437400-437518
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTATCTGCAAACTTTCCCAGGTG
3' ss Score
6.41
Exon sequences
Seq C1 exon
GCAAGTCTGGAGAAGACATGCCGAGCATTGGAGGATCAGCTGAGTGAGATTAAGACAAAAGAAGAGGAGCATCAGCGGATGATCAATGACCTCAATGCTCAAAGAGCTCGTCTGCAGACAGAATCAG
Seq A exon
GTGAGATTTTCACAACTCTGATGTGTCATTGTACAACATCAGAGAGTTGGTGTAGAAGGACTTTTCTGTCCTTTGAGGACAAAACTTGTGGAAAAAGACATTAAGTTTCTGTAAGCTCTGCCAAATGCACTGTCTTAGAGCCCTAATTGTCCACAACACTGTCATCAGTGGCAATTAAAGGCCTGTGTATCTGCAAACTTTCCCAG
Seq C2 exon
GTGAATATTCACGACAAGTGGAGGAGAAAGATGCTCTGATATCTCAGCTGTCTCGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCATTTAGAGGAGGAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748:ENSGALT00000039878:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(3.8=27.9)
A:
NA
C2:
PF0003816=Filament=PD(4.9=35.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAGACATGCCGAGC
R:
TCTCCTCCTCTAAATGCCTCTTGA
Band lengths:
236-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]