RnoINT0096514 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33613838-33614419:-
Coord C1 exon
chr15:33614301-33614419
Coord A exon
chr15:33614035-33614300
Coord C2 exon
chr15:33613838-33614034
Length
266 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CAGTGCCCACCTCTTCCCAGGCC
3' ss Score
6.6
Exon sequences
Seq C1 exon
GCGAGCTGGCTAGGCAACTGGAAGAAAAGGAGGCACTGATTTCCCAGCTGACCCGGGGCAAGCTCTCCTATACCCAGCAGATGGAGGACCTCAAGAGGCAGCTGGAGGAGGAAGGCAAG
Seq A exon
GTGAGGTCCAGTGGGACAGGCTTGGTGGCATCCCTGGGCACAGTTACCACCAGAAGCACACCTGGATGCGAGACATAACCTATTAACCTATCTTCCTGCTAAACAGCCCTCCTGGTCGTTTAATGACTCCTTATCTGTAAGGGAGAGAGGTAGGCAAATGAAAATCGTGTCATGTGGATGAGTCTGGGTCTTGACTGAAGAAAACAGACAGTAGAGACTGGAGGTCTGGGTTTGCTCCAATCTTCTCAGTGCCCACCTCTTCCCAG
Seq C2 exon
GCCAAGAATGCCTTGGCCCACGCACTGCAGTCAGCCCGGCATGACTGCGACCTGCTGCGGGAACAGTACGAAGAAGAAATGGAGGCCAAGGCCGAGCTGCAGCGTGTCCTGTCCAAGGCCAACTCAGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATACAGAGGACGGAGGAGCTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(30.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(27.1=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGGAAGAAAAGGAGGC
R:
CAGCTCCTCCGTCCTCTGTAT
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]