BtaINT0097342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21368463-21369389:+
Coord C1 exon
chr10:21368463-21368581
Coord A exon
chr10:21368582-21369192
Coord C2 exon
chr10:21369193-21369389
Length
611 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTGGTTCCGCCCCTCCCAGGCG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GTGAGCTGTCCCGGCAGCTGGAGGAAAAGGAGGCACTGATCTCCCAGCTGACCCGAGGGAAGCTGTCCTACACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAAGAGGAGGGCAAG
Seq A exon
GTGAGGCCAGCCGTGTGGGCAGTGGACAGGACTGAGAGCCACCCTGGGCAACCAACCTCAGGAATGGAGGCTGGAGTGAGGCTGGAGACTACAGATAGGCCTCCGAAATAGAAAGACTTTCAGGCCAGGTTCTTCTACTCTTCAGCTAAGCCACATTCAAACATCACTCCGTCCCTTAAAAAAAAAAACAACTTATTTATTTGGCTGCACCAGGTCTTAGTTGAGGCGTCTTTACTTGCGGCATAGGGAATCTTTTTTTTTTTTTTTTTTTGCACGTGGAATCTTTAGCTGTGGCATGTGAACTCTTAGCTATGGCATGTAGATCTAGTTTCCAGACCAGGGGTCAAACCCAGGCCCCCTGCACGGAAAGCACAGAGTCTTAGCCACTGGACCACCTGGGAAGTCCCCCTCCTTTCTTATGTGGGACGAGGTGGGCAAACTGGGAAGGTACCTCATGATGTTGAGATTCCACACCACCAGCCCTCTCACCCTGAAGGAGGCTGGGATTTGATTCAAGGTCATAGATACGAAAAGATCCGAAAAATGGGGAGAGGGTCTTCCCTCCCACCTTCCCAGAAGCTGAGCCCACTTGCTGGTTCCGCCCCTCCCAG
Seq C2 exon
GCGAAGAATGCCCTGGCTCACGCACTGCAGTCGGCCCGGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGACTGAGGCCAAGGCCGAGCTACAGCGCGTCCTGTCCAAGGCCAACTCAGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGAGGACCGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(25.5=100),PF0003816=Filament=FE(33.6=100),PF0003816=Filament=FE(13.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(13.7=31.8),PF0003816=Filament=PD(25.0=43.9),PF0003816=Filament=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCGGCAGCTGGAG
R:
TTGGCCTCCTCCAGCTCC
Band lengths:
311-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development