HsaINT0107818 @ hg19
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:7576]
Coordinates
chr14:23858068-23858720:-
Coord C1 exon
chr14:23858602-23858720
Coord A exon
chr14:23858265-23858601
Coord C2 exon
chr14:23858068-23858264
Length
337 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTGCCCCCCCCCCTCCCCAGGCG
3' ss Score
10.78
Exon sequences
Seq C1 exon
GAGAGTTGGCCCGGCAGCTAGAGGAAAAGGAGGCGCTAATCTCGCAGCTGACCCGGGGGAAGCTCTCTTATACCCAGCAAATGGAGGACCTCAAAAGGCAGCTGGAGGAGGAGGGCAAG
Seq A exon
GTGAGGCCCAGTGGGGAGGGTGGGCAGGCTTGATGGCAGCCCTGGGGCAATTCATCTCAGTGCCAGAAATGGAGCCTGGAGCTGGAAAGAGTCCTCTGCAAGGGAAAGACCCTCCAGTCTAGGTTCTGCCCTGCAGCTAAGCGTCATTTAATGCCTCTTTTCTTATTCGTAAGGGGATGGGGTGAGCAGACTGGGAAACTCCTCAAACAGTGAGGTGCCACATCAGCCCACATGGTGAATAAGGCTGGGCTTGGTTGAAGTACTACATAAGAAGAGAATCTAGAGAATGGGGCACAGGGAGTCCCTCCCACCTCCTGGTGCCCCCCCCCCTCCCCAG
Seq C2 exon
GCGAAGAACGCCCTGGCCCATGCACTGCAGTCGGCCCGGCATGACTGCGACCTGCTGCGGGAGCAGTACGAGGAGGAGACAGAGGCCAAGGCCGAGCTGCAGCGCGTCCTGTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATTCAGCGGACTGAGGAGCTCGAAGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616-MYH6:NM_002471:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(32.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(23.1=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGCCCGGCAGCTA
R:
CCTCTTCGAGCTCCTCAGTCC
Band lengths:
310-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)