RnoINT0096545 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33653702-33654220:-
Coord C1 exon
chr15:33654157-33654220
Coord A exon
chr15:33653801-33654156
Coord C2 exon
chr15:33653702-33653800
Length
356 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTACCTGCTTGGTTCACAGACC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GGGAAATTCATTCGAATCCATTTTGGAGCAACAGGAAAGTTGGCATCTGCAGATATAGAGACCT
Seq A exon
GTAAGTTCCACGAATTTGCCGGGGCTCATTTAGGCCGAGCCCATACTGGTTGTACAGCCTCGTCTCAATCTCTTCCCGCAGTATGCATATCTTTCTGTCTCTACGTCAGCCTGAGGCTTTCTCTGGCTTTTCCTCTGTCTGCTATCAGTGCATGATTCTTTGGGGGGAGGGGGTTTCTCTCTAAGATGCTTTCTTTCCTTCTGGGTCTCTGCCTCCATTCTTCATGTGTTGCCCCTGCAGCCATGCACTGGTCTTTCCCTCTGTTCTTTGCTCGCTGTGGTTCCCACCCCTTTCCCTTTACTTTGTACCTGCATTCTAACCTCTCATTCCTCTCCTTCTACCTGCTTGGTTCACAG
Seq C2 exon
ACCTTCTGGAAAAATCCAGGGTTATTTTCCAGCTGAAAGCAGAAAGAGATTATCACATTTTCTACCAAATCCTGTCTAATAAAAAGCCTGAGCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]