GgaINT0128364 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:496007-496329:-
Coord C1 exon
chr18:496266-496329
Coord A exon
chr18:496106-496265
Coord C2 exon
chr18:496007-496105
Length
160 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
ACTTTCTGTTTTCCCTTCAGATC
3' ss Score
13.56
Exon sequences
Seq C1 exon
GGGAAATTCATCAGAATTCACTTTGGTGCCACAGGAAAACTAGCTTCTGCAGATATTGAAACAT
Seq A exon
GTAAGACACTTTCCTCAACTATTCACAATCCATACATTCACTCATCAGTATCCATCTACTTTTTACCTTACCATCTGAACACCCTTCCCCCTTCATACCTTCTCCCTACTTTCTCTTTTGCTGTTTCTTCATGTTTCTGAACTTTCTGTTTTCCCTTCAG
Seq C2 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGAATTCACTTTGGTGCCA
R:
ATTAGCTCTGGTTTCTTGTTGGACA
Band lengths:
154-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]