GgaINT0128364 @ galGal4
Intron Retention
Gene
ENSGALG00000028134 | MYH1B
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_989559]
Coordinates
chr18:487235-487557:-
Coord C1 exon
chr18:487494-487557
Coord A exon
chr18:487334-487493
Coord C2 exon
chr18:487235-487333
Length
160 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
ACTTTCTGTTTTCCCTTCAGATC
3' ss Score
13.56
Exon sequences
Seq C1 exon
GGGAAATTCATCAGAATTCACTTTGGTGCCACAGGAAAACTAGCTTCTGCAGATATTGAAACAT
Seq A exon
GTAAGACACTTTCCTCAACTATTCACAATCCATACATTCACTCATCAGTATCCATCTACTTTTTACCTTACCATCTGAACACCCTTCCCCCTTCATACCTTCTCCCTACTTTCTCTTTTGCTGTTTCTTCATGTTTCTGAACTTTCTGTTTTCCCTTCAG
Seq C2 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028134:ENSGALT00000001427:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGAATTCACTTTGGTGCCA
R:
ATTAGCTCTGGTTTCTTGTTGGACA
Band lengths:
154-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]