RnoINT0096299 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53717869-53718149:+
Coord C1 exon
chr10:53717869-53717932
Coord A exon
chr10:53717933-53718050
Coord C2 exon
chr10:53718051-53718149
Length
118 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TGCTGTCTGGTTTCTTCTAGATC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GGTAAATTCATCAGGATTCACTTTGGCACCACGGGGAAACTGGCATCCGCTGACATCGAGACAT
Seq A exon
GTGAGTGTTCACCTGCAGCAGCATGCTGTTCTCAGGACTGCTAAAGTTGCCTGACAGTCAAGCCACAGCGCCATGTCAGCTTTCACAGTTTTCCTGCTTGCTGTCTGGTTTCTTCTAG
Seq C2 exon
ATCTGCTAGAGAAGTCCCGGGTCACTTTCCAGCTTAAGGCGGAAAGGAGCTACCATATATTTTATCAAATCACATCCAACAAGAAGCCAGAGCTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTCATCAGGATTCACTTTGGCAC
R:
GCTCTGGCTTCTTGTTGGATGT
Band lengths:
154-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]