BtaINT0097283 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30159345-30159624:-
Coord C1 exon
chr19:30159561-30159624
Coord A exon
chr19:30159444-30159560
Coord C2 exon
chr19:30159345-30159443
Length
117 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGTTATTAATTTCTTTTCAGATC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GGTAAATTCATTAGAATCCACTTTGGCACTACAGGAAAACTGGCCTCTGCTGATATTGAAACAT
Seq A exon
GTAAGTGCCTGGATAGTCTTTACCACCATTTCTATTTCTTATGACCTACAACACTGAACAGAAATAAAATTTGCATTTCATATGAATTTTTCTTGTTTGTTATTAATTTCTTTTCAG
Seq C2 exon
ATCTGTTAGAGAAGTCTAGAGTTACTTTCCAGCTTAAGGCTGAAAGGAGCTATCATATTTTTTACCAGATCACATCAAACAGGAAACCAGAACTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAATTCATTAGAATCCACTTTGGC
R:
CAATTAGTTCTGGTTTCCTGTTTGA
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]