HsaINT0107719 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10542875-10543161:-
Coord C1 exon
chr17:10543098-10543161
Coord A exon
chr17:10542974-10543097
Coord C2 exon
chr17:10542875-10542973
Length
124 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGTTATTTGTTTCCTTCCAGATC
3' ss Score
12.14
Exon sequences
Seq C1 exon
GGTAAATTCATCAGAATCCACTTTGGCACTACTGGAAAACTGGCATCTGCTGATATTGAAACAT
Seq A exon
GTAAGTGTTCAGATATCTTTAAAATCATTTCTGATTCATATGACCTAAAAAACTGACCAAAAATCAAATTCGCATGTCACATGAATTTTTACAATTTTCTTATGTGTTATTTGTTTCCTTCCAG
Seq C2 exon
ATCTGCTAGAGAAGTCTAGAGTTGTTTTCCAGCTTAAGGCTGAGAGAAGTTATCATATTTTTTACCAGATTACATCGAATAAGAAACCAGAACTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATCAGAATCCACTTTGGCACT
R:
AAGTTCTGGTTTCTTATTCGATGTAA
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development