RnoINT0102401 @ rn6
Intron Retention
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2301151-2303259:-
Coord C1 exon
chr3:2303206-2303259
Coord A exon
chr3:2301221-2303205
Coord C2 exon
chr3:2301151-2301220
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
CTGTCTGTCTATCTTTGCAGAGC
3' ss Score
12.04
Exon sequences
Seq C1 exon
GTGGTGGCTTCTGTCATCCCTGATGACCACAACTCGGACATCCAGCCTCAGCAG
Seq A exon
GTAGATGTGTAGGCATCAAGCAGACCCAGGCCTAACTTTGCTTGGTTTTGCAGAAACAAGGTTTAGGTGGAATGAGCCATGGGCTTGAGCCCCATGGTGGAAAGCTTTGAGAATCAGGGTACTCTCCTCCTGTGGCCCGAAACCTAAACCTTCCAAGAGCTGGTACCCATCACCTTCCTACTCTCCTCGAGACACATCTCTGGCCAGGCAGGGATGGCTGGTCACTCTCGTGTATTCACTGCTATTGGCCAAAGACTAAGCCTGAGCTGAGAGAGCAAGCAGCCTCCTTGAGAACCAGGCCATGGCTATGGCAAGAGTCAGCCATACCAGGCATGGGGCTGGTAGGGCCCACTCACTGGTACACATTCAAACCTACCACAGGGACCAGAGGGTGGCTGTTAACAGGAAATTGGCGCCTCTGTTGGACATTCGGTGATCAAATCACTTGATAGCCTGGGGAAAGACAGGTCAGAAGGACCAAACAATGCCTTCCTTCCTGGCCATTGGAAACCTTCAGAGCCCTTGTGAAGAGGAGTTAGGCAGGAACCCTTGCTTCGCTACGGCAGCCCCATGTGCAAGTGGTGAGCACTTTGAAGAGGTTTGACAGGGGCTTATTACAAGTCACAGGACAGTCAGTTCCAGTTGATCCAGTCTTTAGTTCATGCCAATCCAACGGTGCAATGTCCTTATGAGCAATTATACCCTCACAGCTATGCTCAAAATCCCCAGGGACTTAAACCTGCATCTGCCAGCTCCTGTCCTGGGCTGTAAGCTTCATAAGGGTCACACGGTACATTTCCGTAGTGTTTCTTTAAGACTAGTTCACAAGCCACATTCATGAGTGTCCCACAGAGGGTTAAGGTCCCCACCTCCTCTCTAACACAGGGCATCCTAGGCTGGGATGACTTCCTAAGATTCTATCCTGAGCCTCTCAGGATCAATGGAGAAGCCAGCATTGAGATTTGGGGATTGATAGAAGACCCAGGAAGTTGCTGACTCACCACTGATGCTGGGCAACCTGTGGACTCTAGACCTGCGGAGACTCAGCCCTGTCCCAAGGTGTGCCTATGGTCTGGGCCTCCCATGAATTTCCAGAGAAGTTTGGCTAATGACTTCTTGCTGACTGCTGGCCAAACTCCCAGACTATATCTTTAACCACTGACTGTGCTAGGTCAGAGCTCAGAGAGTTTCTCTCTTAAGTCCAGATCCACCACCTCAAGACCCCTGTACTCTAGGTCCCACCTTCAGGCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGTTTATACAAATCCAACAAAGGTAAAACTCCACCAGGGAATGTCTAGGAAACACCACCAAACCACAAACAATGGAAAGGCATCCTTTAGCAAGGGCACTCACCAGTACTAGAGAGTAACCAGGTTACCAACTCAAGTGTGGGCTGAGGACTCCAGAGGAGGGAACAGAGAAGAAGGCTATGCACATTTATTCTACTCGATTCATGGTACAGATCTGTGTAGACAGAATACAAGAGGCCATGCTTGGAGCAAAGCCCTCCCGAGTGTAAAGGCTGAAGTGTGAGTTACAAACTTCTAAGGAAAAGGTTAACTCTATTGAAACTTGGCAAAGTATCTTACCTGGTCTATACTTTACCCTTATCCACAACAGGCTTGTGTAGCTTCTTCATATACAGAGTAGGCTCTCAACATCCTGTTAAACATGCTTTTAAGTGGAAGGGTGTAGCCCCTATTGTACCTGAAGGAATCTTGGCAATCTAAATAGTAAAAACCCTGGCAGGTGTTCAAATTGTACGTAAATGACTTTTGAACAATGTGTACACAAATAGTTTTGTTTAGTGTAATATGTAACAAAACCAACTAAACAAAATGTGTCATGATGGCTGCAGGTGGCCTGAGTGAGGACCCACACTTGTACAGTCCCTCTAACTACTGTCTGTCTATCTTTGCAG
Seq C2 exon
AGCTCCCAGGTGGAGCAAGCCGGCCTCCAGTCGTCCTCACCCGTGTGTAAGAGGGTCCTGAGCACAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286:ENSRNOT00000012375:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]