GgaINT0125106 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1301230-1302229:+
Coord C1 exon
chr17:1301230-1301289
Coord A exon
chr17:1301290-1302192
Coord C2 exon
chr17:1302193-1302229
Length
903 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAAGATCATATTCTGTCTGGGAA
3' ss Score
-3.58
Exon sequences
Seq C1 exon
GTGATCTCATCCATCATTCCCAATGATGAGTACATTGGCTTTGAACCTCTCAGGCCACAG
Seq A exon
GTGAGTAGGATGTTGCTGTGAAAAATGGAATGTAGCAGTCATGGAGCTCCACAGAGGGCCTCAGATCCTAACATCATCAGTGTTAATTTTCATATTAATGAATAAACAGTGCTGTTTCTGTCTCTGAAGCCCTGTACCAGACCAGGTCTAGCTGGAATGCTTTGATGTTGACTGGGAAGGACTTGGCAGAATGAGTCTCCAACTCTTGAGTGATGCGTTTTTGTCTCTTCACTGCATCCAAAGAGCAGTGGAGACTTCGCTGCATTCAACACACATTTGTAAATTTACTTTGTTAAGTTTGTCAGCACAGGCATAGCTGGCTTGCAGTTATGTGAGTGTCTTGGAGTCAATTGTTTGTTACTCTGCTCGTGATGGATGAAGAGGGAGAGGGAGAAGTGGCAGGTTCATCCTGGTAAGGTGTGGAGCAGCAGAATTCTCTCTGGCTGTTGTGGTGTGACAAATAGGGATTACAGAAAACATAAGTGAAGCTCCCTCCTATTCATAGGGACAGTAAATAAGGTGGTAATGTTGCTATGTAACATACTGTTACAAATATATGCTGTTGTCTCCCCACAGAAACAGGGCTTTTATGAACCCAGTGCTGACTCTGTGAGGTACGTGTTCAGTTCTACCCTCGTCTCACTCTTCTCTCACTATTTCTGTTCAAAAAATCATGTTTTGTTTTCCCATATCTCTGCCTGAGGACTCTTTGTGATTCACACCCACCTGTCCCCAAGAGTGGAATGAATGCTGAATGCATAACGGCTTGTGTGGCTGCAAGAAACACTGCGCCTGGCAAGAGTGTGGCAGTTTAGTAGCAGCTCTTGTACAGAGATATTAGGACAGTTTGCAGGAATTGATTCAGTGATCTTGGGATACAGGCAAAGATCATATTCTGTCTGG
Seq C2 exon
GAAATGGGGGCAGAGAGAGGCTGTAGGATCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]