BtaINT0103035 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105703970-105705924:-
Coord C1 exon
chr11:105705868-105705924
Coord A exon
chr11:105704131-105705867
Coord C2 exon
chr11:105703970-105704130
Length
1737 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTGTCATCTCCTGTCCATAGGGA
3' ss Score
11.4
Exon sequences
Seq C1 exon
GTGCTGGCCTCCGCCCTCCCCACCGACTCCCACGGGGTCGCCCCGCCGCAGCCACAG
Seq A exon
GTAGGCGAGCCGCCTCCCGCCCCCCGCGTCTCCTCTGGCATTTGCAGGTCGGGGCCTCCTGAATTCTCTACCCTTAAGGGTGCCTGAAGCCTCCCCGGGGCTCCCTGTGTCCCTCCGATCTAGACTCAGGGGGCAGCCCATCCTGGTGAGACCTTGCCCCCTGGCCCCCGGGGTTCCTGGGGGGTCTGCGTCCTGAGGAGGGGTCATCTGTGCCCACAGGCTCTGGACGTGCGTGGTGAAGCCAGGCCTCGGGCTGCTGCACGGTAGGAAGGGGTCGGCACCCACTTCTCCTATCAGCAGGGGCCCTGCGAGGCCTGCCTCGCGGCCTGACGCTGGAGCTCCTGGGCAGACCTGCTGTGGCCACTCAGGGCCAGGGACCGGGGGCCAGCATGGCCTGTCCCCTTTCCAGACTGTCCAGGGTCCCAGTGTGGTGCGGGGCGTCCTGCCTCGCTCAGCCTTCCCATCTGTCCCGAGCCCATCCTGCCCCCAGGGGGAGAGCCCACCCCTGCTCAGGCCAGGGGGCACCAGAGGCACCGGTGGGGTGCAGCTGGCCACAGGCTGCAGGAAAAGCCCACCAGACGCAGCTTTGCAGGTGGCCCTCTGAGTGGGGTGCTCCTCTCCAGCTCGGGGCTCTGCAGGCCCACCTTTCAGGAGGCCTTGCCCGTGGGTGAGGCCTGGGAACGAGGGCCCCTCCCCTCCAGGGCCCGTGACACTGCCCCCGGCAGAGCTGACACCCCCTGCAGCCCCAGGACACCTACTGACACGGAGATGGAGGTCAGCTCCGGCCAGGCTAGGCAGCACGACCGTGGCACGCTGGTCACCCACAAGGTGGGTGAGCCCCGGTGGGGCAGGCAGGGGCCACAGCATTTGCAAGACCCCCACCCCAGGCTGGGCTTGGGGGACCAGCCCCAGCAGGGCGTCTCAGGCCAGGCAGCTTGCCTCATCGCCTGCTGGGGACAGGGCTTTGGCTTCCTTAGGCAGGCCAGGGGCCGGGTGGGAGCCAGCCGCAGCAACCAGATGCCAGGGGTCGGGGACACACAGACGTTCACAGGTGCTCAGAAGGGAGAGGGGGGTGCTCCCCAGCCCAGACCTGGGAGAGGCTGCAGTGCATGCATCAGAGCCGTGAGGCTTCCGCCCCTCAGCTGGGGCGCCCGGCCTTCCTTGCTGGGCGCAGGACTCCCCGAGATGCCCCAGGGGCTGCGTGCAGCTGAGGAGGGGTTGGCCGGGGCTCCTCAGGGCAGGTGTGCCTTGAGGGGTGGGGCGCCAGGAGCGGTGAGGCCGCCATGAGGGAGTTAGAGTTAACCACAGAGAAAGCGGCCGGGTCACTCGCTGGGCTGATTGGTGTTCTTGAAAGCCGTTGGTTCATGACCGCTGTGCTCAGCGCTAGCCTTCCAGACAGAACGACAGCAGCTCCCTGACTGCTTTTAGCAGCCGGCAAATCTGATAGAAATCCAAACGCTTCGTGTGCAAACTCAGCCCTCTCGGCCCACCCTGAAGTCGGGGTCTCCGTCCGCGGGTCAGGCGGCCTGGGCTGGGGACTCTGTGTCGTCCCGCCCGCAGCACGCCCGCGGCTTGCAGTCCCGGCACAGAGTGATGTCCAGCGGGTCCCTGACTTCAGCCCTAGCCTCCCGGGCTGGCTGGGACCCCTCAGCTGCAGCCGCCACCTCCTGGCTGGCCAGGGGAAGACAGGTCCGCACCCACAGGCACGGCGGCCTGTCTGTCATCTCCTGTCCATAG
Seq C2 exon
GGATCTGGTTCACGCTCCAGACTGACCCATGACAGGGCTGAGCTGGTGGCCTCCTGCCCGGCTGGGCCATCTTGCAGGCCGTGCCCCTCACCCTCCCGGGTCTGCTGGGCCCAGCAGAGCCCCCGCCCCCGCCCTCTGCCCCGACCTGAGGCCCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCACCGACTCCCAC
R:
TCTGCTGGGCCTCAGGTC
Band lengths:
202-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development