HsaINT0115012 @ hg38
Intron Retention
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137430784-137431100:+
Coord C1 exon
chr9:137430784-137430843
Coord A exon
chr9:137430844-137431074
Coord C2 exon
chr9:137431075-137431100
Length
231 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTGTTGCTTTGTGTCCACAGGGA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GTGGTGGCCTCTGCCATCCCCGACGACCAGGGCTGGGGCGTCCGCCCTCAGCAGCCACAG
Seq A exon
GTGGGTTTGCGGCCCCTCAGACCCCTGCCTGGCCTCACCCAGCTTTCTGGGAAAGAAAATGCTGCACAAGCTCTGAGCCCTCCTGGGGCTGCGAAGTTCCTCTGATGGGAGGTGTGGGGTGGCCATCCCATCCCTGTGTAAGACCTGGGGAAACCACTCTTCAAGGTTCAGGAGGAGGGAGGGCGGCCCCCGACCCTTAACCAGAGCGAGGTTGTTGCTTTGTGTCCACAG
Seq C2 exon
GGACCAGGAGCGAACCATGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747:ENST00000341349:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development