GgaINT0125106 @ galGal4
Intron Retention
Gene
ENSGALG00000008952 | noxa1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BWX5]
Coordinates
chr17:909691-910364:+
Coord C1 exon
chr17:909691-909750
Coord A exon
chr17:909751-910326
Coord C2 exon
chr17:910327-910364
Length
576 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATGCTGTTGTCTCCCCACAGAAA
3' ss Score
11.6
Exon sequences
Seq C1 exon
GTGATCTCATCCATCATTCCCAATGATGAGTACATTGGCTTTGAACCTCTCAGGCCACAG
Seq A exon
GTGAGTAGGATGTTGCTGTGAAAAATGGAATGTAGCAGTCATGGAGCTCCACAGAGGGCCTCAGATCCTAACATCATCAGTGTTAATTTTCATATTAATGAATAAACAGTGCTGTTTCTGTCTCTGAAGCCCTGTACCAGACCAGGTCTAGCTGGAATGCTTTGATGTTGACTGGGAAGGACTTGGCAGAATGAGTCTCCAACTCTTGAGTGATGCGTTTTTGTCTCTTCACTGCATCCAAAGAGCAGTGGAGACTTCGCTGCATTCAACACACATTTGTAAATTTACTTTGTTAAGTTTGTCAGCACAGGCATAGCTGGCTTGCAGTTATGTGAGTGTCTTGGAGTCAATTGTTTGTTACTCTGCTCGTGATGGATGAAGAGGGAGAGGGAGAAGTGGCAGGTTCATCCTGGTAAGGTGTGGAGCAGCAGAATTCTCTCTGGCTGTTGTGGTGTGACAAATAGGGATTACAGAAAACATAAGTGAAGCTCCCTCCTATTCATAGGGACAGTAAATAAGGTGGTAATGTTGCTATGTAACATACTGTTACAAATATATGCTGTTGTCTCCCCACAG
Seq C2 exon
AAACAGGGCTTTTATGAACCCAGTGCTGACTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]