RnoINT0105361 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212807577-212808035:+
Coord C1 exon
chr1:212807577-212807642
Coord A exon
chr1:212807643-212807720
Coord C2 exon
chr1:212807721-212808035
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATTGTTGATCCCATTTCCAGAGG
3' ss Score
6.77
Exon sequences
Seq C1 exon
AAAAGACAGAAGTTTCTCAAGATATGGAGCAGAGTCCAAACTGCTCATCAACTCGTAGCTGCCCAG
Seq A exon
GTAACATTCCCTCTATAAGTTTCCCAAGAACCTATCAGCCAGAAAGCTTCGTCCACTGATTGTTGATCCCATTTCCAG
Seq C2 exon
AGGAAGGTGCACTTCGGGTGTTTGGGGGTGAGAACAGCTGCTCTGGCCGAGTGGAGCTTTGGCATGGAGGTTCCTGGGGCACGGTGTGCGATGACTCCTGGGACCTGGCTGATGCAGAAGTTGTGTGCAGGCAGCTGGGCTGTGGCCCAGCCATAGCTGCCTTGCAGAATGCTGCCTTTGGTCCTGGCTCAGGGCCTATATGGCTGGATGAAGTGGGATGCCGAGGCAGTGAGCTGTCTCTGGGAGCCTGCCAGGCAGAACCATGGGGATATGGAGACTGCTCCCACAAGGAGGATGCGGGTGTGCACTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACTGCTCATCAACTCGT
R:
GCTGCCTGCACACAACTTCT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]