RnoINT0106099 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51794173-51798269:+
Coord C1 exon
chr7:51794173-51794380
Coord A exon
chr7:51794381-51798141
Coord C2 exon
chr7:51798142-51798269
Length
3761 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTTGTCTGAATGTAACAGAGG
3' ss Score
4.84
Exon sequences
Seq C1 exon
AGTTTATCTCTGCCTCAAACAATTGGGCAGGTGCACTTTGAGAAGCTAGCTGACTACATTCTGGTGAAAACGACCTTTGGATTTTCTTTGGCTTGGGATGGAATATCTGGAATTTACCTCAAACTATCTGAGGAGCACAGAGGGAAATCATGTGGCTTGTGTGCAAATTATAATGGCATTCAGTCAGATGACTTTGTGATTCACCAAG
Seq A exon
GTAAGGAGCTAGAACATGAGAAAGGAGCAGGTCCTTTAGGGTCGTCTTCCTTCGGCCAACAGCAGATAGCATAGAGAACACGTGACTGACCGTGGAAAGTCCTTGGCCACCATTGGTCCACTCCAATGATTTTAAGCGGTTGTCAAGATGGAAAACATTTTCTGGTTACTTGCCAACATTTGCTAAGTTAAGATGCAGAACTTGCTCACACAGCAAATGTTAAATGAGCATTTAGTTTGTAACAGGAGTTTTGTGGATACTATGTATACTGCTCTGGGGTCTTGGGAACTAAATGAACAAAATGAGTAGTTCCCCATCCTTGGTGTTCATGGTCTAGTGATTTAAACTTTTTGGGTTGAATGTGTTTACTTTAGGAGAAAAGATACTTTGTATCCAGTCTTGACAATAATGAGTTAAAATGACTGCCAAATAATAGGTTTATAAAGATGATGGAATGAAATCAGGATTACCTACTTGGCAAAGCAACTGGCAAGGGTTTTATATGATTTTCTGGTTTCCTATTGAATCTAAGGGATGAAACTCAGCTCAGTGAGTCATTAGTTACAAAGTCAGCTTCTGTCTGGAGACTACTGAGGAGTAAGAGAACCACAGGTCATGCTCACATAATGAGGTTATATAGAAAAGGAGCATCATTCTTAGTCCCAGTGGACCTGGCCTGGGAGCATGCTTCCACTCTTACATATATCTGAAGTTACATCATTGAATCTTTCTGTTGCTGTGGAAGAGGACCATAGAAATTGTGGACTAACTGAGTAATCAGTGATAGTAAAAATATATCTTATTTTTAGTAATAATGTTTATTATGAGCACATAGCAACATTGTTGCTAACACTCATATCATCTTGTATGGTGCTTAGTATTTTCTTAATTTTATATAAAGGTCACATCTCCTAATGTAATGCAACTGAAGGCTGACTCTATTAGAGTTGGTTAGATGCTATTACACTTCAGCACAATCAGATACAATTGCTAACAATTGCCTTTAAACTAGTTTCTTACAGAATATTGTTCTGTATTACAAACTTAATAATAGTTGTGTGTATGTTGTACTTTAATAGATGTTAAAAGAACATTCCTGTGTATGCATTTTGCAAGTCAGAATGTGGGGAAAAATTTTGCTTTGCTATTTATTACACTTTTTAATGTTAATGATGTGATAGAATATATTTTCAGAGTGTCAAGGATTGAGTGAGACACTTCTCATAAACATGTAGATGGCCCATCACATAGATAATACTCAGTTTACGTTACTTACCTTGTAATTGTCCCCAGGTATCCCGCAGGAGTAGAAATACATCTTTATATATTTTTAAGACGCTCTCAGTAAAATGCAAACATTTTACTGGCACTCCATGGATAATTTATCATCAGGATTTGTTTACCAAGAGCTAGATTAGAGAGCCTGGCTCCAATGAGTCAATTTTCTCATATATAGAACAGAAATAATTGAAACACTCCTCAGTGTCTCCCAGTGCGTGAATATCTAATGAGAAAATGTAAATGGAAGTGCTCTGAAGTCCGTGAGCACAATATAAATGTCTGGGATCAGCAACATTGTGAAATGGTACTTGCATCCGTTGGGTATTGAAAATCAGAAGGCTTACGAACTTGGGGTCCTGAGACTGTTAGTTAGGAAGGAGTATTTGGAACTAACGCCGAATCAATCAAATGGTTATTCTTGATATAATTTCCCTTCTGATCAAAGTTTCATGAAAAACCTAATACTCAGTCCAGTTCTTAGTGTGGGAGTTGGACAAGGTTGCTTTGAATGACTTCTGCCAGGAGGTGCAGAGAACCTGATGTGGAGGTGAGGATGGAAAACAGCATCTGTTCTTGTTAGAGTCAGGAGGACCGAGCAGGCTTCCCAGGAGTGATCAGAACTATTTCTCCTTCCATTCCTACTTAACCTTCAAAGATGACTTCACGAAGCAATGAGGCCTCCCAGAATTTCTGTGCCAGGAGGAAGAATTAAGTTGTTTTCCAGCTGAGGGCACTCCATGTTCCTAGCTCATGTCTGTGTCTTGCTTCACACCAACAGAGTGTGAAGTAGAATCCTGCTCTACTCCCATTTTCCCCAACTTGATAACTAATAGCTGTCTTCCCGATCGCATCCCAATATGCTTGCTCAATGCATTATTCTACTTATAACATCCCCCATAGGAAGCATTTAGGTTTAGTGAGCTGCTGAACTAATAGATATGGATTTAAAGTTTTACGATAAAAGACATGTATGGCTCTTTTACTGATACAATGTGTAGAACTTGTTAAACACTTGAATAAAAAGTTAATGTAAACTCTAGTGTAGTGGTACTCAACCTTCCTTATCCTGTCACTCTTTAATAGAGTTAGTTCCTCATGTTGTGGTGACCCCCAACAATAAAATTACTTTCATTGCTATTTCATAGCTACTATTTTGCCACTAAGTCATTGCCTGGGCTGTTTTGTTGAAATGAGTTGTACTTTTGGAAACATTTTTGTTCTTCAGACTTAAAAAACAGTGTTATTCATTTCAAATATGGCACTTTGAAGTGAAATATGGCTATACCTTTACTTAAGGAGAACATCAGGGTTTTTTCTCCACTTTTAAATAAGTATTTTAGCGCAGGTTTTGTTCAGTGTGTAATGTAGCCAACAATTCCAGAGATCACAAAGGAAGCCAGATATTCTATAAGATCAGGAATATAGTTTAATAAATATTGAACATTCAGCTACATTTTCAACTCATTTGTTTGGTAAGTATAGTTTGAGCTACATGTTAGATATTAAACAGAGGATCCAGGAATAAAACAGTAAAGCCAGTCTCTCCTTTATTGTAATAGAAGTGAGGAAAATGTGCTCAGGGAGAGCAGGGAAAACATTTCACGTGAGATTCGGATTAATCAGCACAGTTGTCACTACCATCAAGTCTGGGTGGCAGAAAATTCAAAGCTCCAATATGAAATCCTTCTGTCTTAGAATTTGAGAGTCAGCCTTATCTGAATCTGGGGCAGGATTAATTTCCATATCCTTTCTTGAACTTATTTAAAGGCCAGGTGGTGAAGCAACTTAAAACCCGTCTGTTACAGGCCAACTGTCTGTTGGGTCATATATGAACTCTTAAAGACTTCCCCTTAATTATTCTGGGATCAGTTAGGCTTCTCAATACTGGGATCCCTTTAAACCGTGTTTCAATCTACCGTTCGTCATATTCAGATGAAGCAGGTTCACTTCTTAGACTTACTTTTGTTGGGTTCTTCTCTAGTCTTCCGTTGCCCCTATGTGTGACTTCTGAAATGTATTTATGGTTTCCATAAATTTTGTTGTTGTTTATTCTCAAAATGGAAGTGAACCTCAAAAAAAGGTGCACGTGTTTTGTGTGCGTGTTCATGCATGTGGAGATGTGTATGTGTGCACCTATGTGTATTTACATGTGGAGTTCAGAGGACAACCTCAGGCTTTGTTCTCAGGAATTGCATCAACCTCCCTTGAGCCTGGGTCTCTCACTGTTCTGGAAGTCATCAAGTATGGCAGACATTCTGGCCAGTGTGCTCCTGGGATTTCTTTTTCTTGGCCTCCCTTGCGTTAGAATTCCAAGTGTACACTGCCATGCCTGGCATGTTTGCCTGGGGTTCTGCTGATCAGCTCATGTTCCCATGCCTGCGTGACAAACACTAGCTAAGACAGCTCACCCAATCAGAAGGATAATTTTAATAAGATTTGAGAAAACGACACTAATCCAACTTTTTGTCTGAATGTAACAG
Seq C2 exon
AGGACTACACAGAAGACATTGCTATGTTTGCAAACAGTTGGCTGGTGCTAACTCCAGATGATGCTAGATGTGTACCCACTCCCTCAGACTTTCCAAATCCGTGTTCCAGTGGAATGCCAGCATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=WD(100=100.0)
A:
NA
C2:
PF0009420=VWD=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]