Special

MmuINT0071243 @ mm9

Intron Retention

Gene
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107324007-107329330:-
Coord C1 exon
chr10:107329125-107329330
Coord A exon
chr10:107324135-107329124
Coord C2 exon
chr10:107324007-107324134
Length
4990 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTATGTCTGAATGCAATAGAGG
3' ss Score
1.99
Exon sequences
Seq C1 exon
TTTATCTCTGCCTCAGACACTTGGGCAGGTGCACTTAGAGAAGGTAGCTGACTACATTCTGGTGAAGACGACCTTTGGATTTTCTTTGGCTTGGGATGGAATATCGGGAATTTACCTCAAACTCTCGGAGGAGCACAGAGGGAAATCATGTGGCTTGTGTGCAAATTATAATGGCATCCAGTCAGACGACTTTGTGATCCTGCAAG
Seq A exon
GTAAGGAGCTAGACCATGAGAAAGGAGCAGGCCTTCTAGAGTTGTTTTTCTTCAGCCAACAGCAGATAGTAGCCAGAACACTTGATTTTTGATGGAAAGTCCGTGGCTGCCATTTGTCCAGTTAAGTGATTTTAAGTTGAGGTCAAGAAAGAAAACATTTTCTGGTTACGTGCCAACATTTGCTAAGTTAAGATGTAGCACTTGCTCACATAGAAAGTGTTAATTGAGCTTTCCATTTGTAACAGGAATTTCATGGATACTACATATACTGCTGTGGGGTCTTGGGAATAGCAATGAGCAAAATGAGCAATTCTCCATCCTTGGAGTTCATGGTCTAGGGATTTAAACCTTTTGGCTAACCTGCTTACCTTAGGAGAAAAGATATTTTGTATCCAATCTTGACAATAATGAGTGAAAATGACTGCCAAATAATATTTTGTAAAGATGATGGAATGAAATCAGGATTACCCATCTGGCAAAGCAACTGGCAAAGGTTTTATATGATTTCTCGGTTGCCTATAGAATCTGTGGGATGAAACCCATCTTAGGGAGTCACTTGTTACAGTCCACCTCTCTTTGGAGACTACTGAGGAGTAAGAGAACCATAAGGCATAATTATGATTCACATCCACATAATGAGGTTATATAGGAAAAGAACATTGTTCTTAATACCAGTGAACCTGGCCTGGGACCATGCTTCCACTCTTAGATATTTCTGAAGTTGCATCATTGAATCTTTCTGTTGCTGGGAAAGAGGAATATAGGAATTTTGGACTAATTGAGTGATCAGTGATAGTAAAAATGTAGCTTATTGTTTGTTATAATGTTGATTATGAGCGCATAGCATCATTGTTGCTAACCCTCATATCATTTTGTACAGTGTTTAGTATTTTCTCAATTGTATAACGAAGTCACAGTTTCCAATATAATGCAGCTATCTGCTGATTCTATTAGAATTGGGTTAGATGTTATTACACTTAAGCACAATCAGACACAATTGCTAACAATTGCCTTTAAACTGGTTTATTACAGAATATTGTTCTGTATTACAAACTTAATGATAGTTGTCTGTATGTTGTACTTTAATGGATGTTAAAAGAGCATTCCTCAGTATGCATTTTGCAAGTCAGAATGTAGGGAAAAATCTGCTTTGCTATTTATTACACTTTTTAATGGTAATGATGTGACAGTATATATTTTCATAGTGTCAAGGATTAAGTGAGACACCTCTTGTAAACATGTAGATTGGCCATTACATAGATAATACTCAGTTTATGTTATTTACCTTGCAATTATCTGTAAGTATCCCACAGGAGTTGAAATGCATTTTTGTATATTTTTAAGATGGCCTCAGTAAAATACAAACATTTTACTCCCACTCCATGGATAATTTATCATCAGGACTTGTTTACCAAGCGCTAGATTGGAGAGCCTGGCTCCAATGAGTCAATTTTCTCATATATAGAATAGAAATAATGAAAACGGCCCGCAGTGCCTCCCAGTGCGTGAATATCTAATGAGAAAATGTAAATGGAAGTGCTCAGAAGTCCGTGAGCACAATATAAATCGACAAGATCAGCAGCATCGTGAAATGGTACTTGCCTCCGTTGGGTATTGGAAATGAGGAGGCTTACAAATTTGGAGTCCTGAGACTACGTTAGTTAGGAAGGAGTATTTGGAAAGTTTCATTAAAAAAACAAAACAAAACGAAACAAAACAAAACAAAACAACCCCACCATAATTCTCAGTCCAGTTCTTAAAGTGGGAGTTAGACAAGATTGCTTTGAATGATTTTTGCCAGGACTGTCAGAGAACCTGGTGTGGAGCGAGGGTGGAAAACAGCGTCCGCTCTTGTTAGAGTCGGGAAGGTGGACCAGGCACCCGTGTGCAGGGACAGTCTGCTCACGATTTCTGGAACAGGAAATGATTCCAGGCAGTGAAGTCCATGAAGGGATCAGGCAAAAGTCTATTAGGTGAAGAGCAATTGGGAAGAGCAATGAAGTCAAACTGAATTCGGGATGAGCTTTGAGGGCAGAAGCAGACTCTTGCATGTCTGTTGCAGAGAAGCCCACGAAAAGGCAATCGCTCCTTCACAGTCTGGCAGATAGCACAAGGCAAAAACAAGTCGTAAGGACACTAAAAGAGCCTGCTTTTTTATTTCTTCCCATATTGTAAAAATGCAGGATAATTTCCAGAGGCAAGCTTGACGCCTTTGGCTCTAAAGAGTCTGGTGTTTGCTTAAAGCTCAGCGCAGGCTCTGCCGATTGGATCAAGTGTTGGATAGTCTGATGGCATACTATTGATTATGCAGCTTCCCAAGAGTAATTAAAACCATTTCTCCTTGTGTCCCTTCTTATCCTTCAAAGATGACTTCGCAAAGCAACGAGACTTCTCAGAATTTCTGTGCCAGGAGGAAGAACTCAATTTGGTGTCTAGATAAGGACGCCATGTTCCTAGGTCATGTGTTAGTCTTGTTTCACACCAACACAAAGGTCCTGCTTTACTCTCACTTTTCTCCCAACTTAATAACCAATAGCAATTCCTCACGATTGCATCCCAATATGCTCACTCAAGGCGTTATTCTCCCCACAGCATCTCCCATAGGAAGCATTGTAATTTAGGTTTAAGGGCTTCTGAACTAATGGATATGGATTAAAAGTCTTACAATAAATGACATACATGGCTCTTTTACTAATATAATGTAGAAGGACTTGTTAAACACTTGAATCAAAAGCTAATGTAAACTCTAGGGCAGTGATTCTCTACCTCCCTAGTCCTGCCACCCTTTAATATGGTTAGTTCCTCTCACAGTGGTGACCTCCAACCATAAAATTCCTTTCGTTGCTACTTCATAGCTGTTATTTTGCCAGTGTTATGAATTGTAATGTAAATATGTGATATGAAGGATATCTGATATGAAACTCCAAAGTAGTCGTTACCCCCAAGTTGAGAAACTCGCCCAAGGCTCAGGCTGTTTTGTTGAAATGAGTTGGACTTTTGGAAAGATCTTTGTTCTTCAGACTTAAAAAAAACTGTGCTATTTATTTCAAATATGGCATGTGCCTTTGAAGTGAGATAGGCCTATACCTCTACTTAAGGAAAGCATCAGGTTTTTTTTTTCTTTTAAATAAGTATTTTAGAGCAGATTTTGCTCAGTGTGTAACATACCCATTAATTTCAGAGATCACAAAGGAGGCCAGATATTCTTGTAAGATCAAGAATATAATTTAATAAATACAGTACATTCATCTACACTTTCCATTCATTTATTTGGTAAGTTTGCGCATAGGCTACATATTTGATATTAAACAAAGGATACAGGGCTAAAACAGTGAAGCCAGTCTCTCATTTATTGTAATAGAAGGTGAGATAAATAAAGAGACAAATTAGAACATGATATTTGTGAGAAATAACAGCTTTGATGGAAAGTGGGAAACAAAGGAGTCCAAAACGAAGAGAGGAAACTGACCAACTAAAGAGTGCTTCTTTAAAACCTGTTTAATTTTTAATTTAATGTAATTTAATACTGAGTGAATATTATCCTATTACAAATTTTATGAATTGATTTTAAAACATAATTGTAACATAATACGGTTTTTAAAATACTAGGAATTGAACCTGGGGGGGGGGGGGCATGTACATACTAGGGAAGAGCTCTATCACTGAACTACATCCCAGCCTTCTTTTTCTTCTGAGTTTGACTCTTGCTGAGTCACCCAGGCTGACCCTGAACTCACTTGTAGCCAGGTAGAGCTGCGGGCTTGCGCTCTTCCTGCTTAACATCTGAGAAGAGTGGTTTTGAAGGAGCAGGAGGCCCAGGAAGACACGGGCCCTAAGTTGGGGATGAGCAACTCTCAGAGCCAAGATGGCTGGAGAAGTTTGTATAAGAGGAGGAGTTGGGAATTATGGGGTGGGCGTGGCAGGTGCCTAACCTGCCCACTCTCCAAGGCTATAGGGAAGTTTGGAATGTTAGCAAGGAGCAAAGCACTCCTGTAAACAATGGGTGTAAGCAGCATTTGCTAGTAGCCCATACATACCACCTCCCTACATAAAGGTGCTCAGGGAGACCAGGGAAGCATTTCACTTGAGATTCGGATTAATCAGCACAGTTGTCACCACCATCAAGTCCGCGTGGCAGAAAATTCAAAGCTCCAATCTGAACTCCTTCTGTCTGTGAGATTTGAGATTCAGCCTTATCTGAATCTGGAGCAGGATTAATTTTCATATCTTGTCTTGAACTTATTTAATGCCAGGTGATGAAGCAACTTAAACCCGATCCATTACAGGCTGTTCACCAACTGTCTGTTGGATCATATATAAGCTCTTCAATACTTCTCCTTAATTATTCTCGGATCAGTTAGGCTCCCTAATACTGGGGTCCCTTTGAACCATGTTTCAATTTACTGTTCATAATACTCAGATGAAACAGATTCACTTCTTAGATGTATTTTTGTTGGTTTCTTCTCTGGTCTCACATCGGCTCTACGTGTGTCTTCTGAAATGTTTTTATGGTTTCAATACATTTTGTTGTTGTTGTTGTTTACTCTCAAAATGGAAAAGAACTTTAAAAAAATGTGTGCATGTGTCTTTGTGTGTGCTCATTTGTGTGTGCACTCATGCATGTGTAGATGTGTATGTGTGCACAAATGTGCATTTGCATGTGGAGATCATAGAACAACCTCAGGTTTTGTTATCAGGAATACCATCTACCTCCTTTTAAACTGGGTCTCCCACTGGCCTGGAACTCATCAAGTATGGCCAGTGAGCCCTGGGGATTTGTTTTTCTTGGCCTCTTAAGCATTAGAATTCTAAGTGAACACTGTCAGGTCAGGCATGTTTACATGGGTTCTGCTGATCAAACTCAGGTTCCCATGCTGTATGGCAAACACTGGCTGAGACATCTTACCCAATCGGAAGAATTTTTAATAAGATTTAATAAGATTTGAGAAAATGACACTAATACAACTCTATTTATGTCTGAATGCAATAG
Seq C2 exon
AGGACTACACAGAAGACATTGCTATGTTTGCAAATAGCTGGCTGGTGCTAACTCCAGATGATACTAAATGTGTACCTACGCCCTCAGACTTTCCAAATCCATGTTCCAGTGGAATGCCAGCATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009420=VWD=PD(45.3=97.1)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types