Special

HsaINT0020318 @ hg19

Intron Retention

Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80626672-80632758:+
Coord C1 exon
chr12:80626672-80626877
Coord A exon
chr12:80626878-80632630
Coord C2 exon
chr12:80632631-80632758
Length
5753 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTGTGCCTGTGTGAAATAGAGG
3' ss Score
4.61
Exon sequences
Seq C1 exon
TTTAACATTGCCTCAGACAATTGGACAGATTTTCATTGAGAAACTAGCTGACTACATTCTTGTGAAAACAACCTTTGGCTTTTCATTGGCTTGGGACGGGATATCTGGGATCTACCTCAAGCTGTCTGAGGACCATAAGGGGAAATCATGTGGCCTATGTGGAAACTACAATGACATTCAATCTGATGATTTCATAATTCTGCAAG
Seq A exon
GTAAGTGAAGCAGAATAAATGTGTGGGTACCTTCTAAAGCCTTCTTCTTCCCCTGACCAAGTTGTTTGTACCCAGAAGACTTGTCATAGCTTTGGGAAAATTTGTGGCTGTCACTTGCCTGCTTTAGTGATTTTAAGTAAAGGTTGAATAGGAAAATATTTTGGTGTAATTCTTGAAAACCATGAACTAGTTTACCTTTGCTAAATTAGCATGAAGCACTTACTCACATAACACATTTTAATAGAGCATTTGCTTTGGGTCAGAAGGTCGGGATACCTCTGTATCCACTGCTTTAGGAACCTGGAATACATCAGTGAACAAAGCCTTTCACATCTTCAAGTTTATATTCTAGTGGTTCAAACCCATTTGGGTCAGATATGTCTATGTTAGGTCAAAAACTATTTTTGTATCCCTTCTTGATAGGAATAAGTTGAATAATTGACAAATAATAGTTTTGCAAAAATAATCAACTGTGAGCAGGAAAGTTGAATAGTAACTTGGAAAGGTTTTATATACCTACCAGATCATGTATTAAATCTAAGTTATGAAACTAAAAGTGAGTTATAAGAAATAGGTTTTGTATCAATTCAGATACTAGTGTGCAATGGTGATAGAATAAGAGAATCACAAACCATAATCATGACTTAGGTCCATACAAGGAAGTGCAATAAGAAGAGAATACTGTTCTTAGTACCAGTGAACTTGGGTTTGAATCTCCTTTCAACTTTTATAAGTTCTGTAATTTGAGGAAACTCATTTAATCACTTTTATGCTTAGTTTCTTCAGCTGTAAAATGGGGCTATGCTAATTTGGAACTCACAGAGTAGTCAGTAATAATAATAATATACTTTGATAATATTTATAACAATAGTTTGAGCACATAGCTATGTTATTCCCAATCCTCACAACATCCTGTAAGGTGAGTAGTCTTTTCTTTCCTCTCCTTTCCTCTCCTTTCTTTTCTTTTCTTCTGTTCAAGATGAGGTCTTGCTATTTCTTTTCATTAAGATGGGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTCATCCTCTGGTCTCAGCCTCTCAAGTAGCTGGGACTACAGGTGCACCCTTGCACTCAGCCAGTATTATTTTCTGAATTTTATGATGAGAGCACAAGGTGATGTGTCCAATGTAACACAGCTTGTAACTGATACTGTCAGGGTTGGATTACAGACCTGACAGGCTCCCTGTGCTTAGATAAGTGTTTGAGTAATTGCCATTGAAGCTGTAAAGTGCTATATAATACTTCCGTTTTATATTATAAAATTAATAGAGATGATTTGCCCCTATGTTATGTTTTAAAGGATGGTGAAAGGACTACTTAGAGCATGGGCTCTGGAGTCAGACTGTGTGATTCAAATTCAGCTTTATCAATTATTAAATTTTATAAGTTTAAAGATATAATAAGAGCATATACTTCATAAGGGTTGCAAGGATTAAATGAGACAATTCGTGTAAAACAGTACAGTACCTGGCACATAGTAATACTCAATACATTTAATTTAATTTATAGTCATCTCCAAGTATTTCTCCATAAGCCTATAATGGGGCTGAAATAAAAACGTGTGAAAATGTCTCTACATTGCTTTGAGAAGCCTTTATTAAAATGCAAATGTTTTGCTCAAGATAGATAATGCATCGTCAGGATTAGTTTACTAGTAGCTAGAGTAGAGAGCAGGGCTCCAAAAAGTCAATTTCCTCATATGTAAAATAGAGATAATGATAATGACTCTGGGAGCTTCCCAGCCAGTGAATATTGAATGAGAAAATGTAAATGAAAGTGTTTAAAAGTTTCTGAGCACAATACAAATGTATAGTACTGGGATCATCTCGAAATGGTGTTTTGCACCCAGTTGGCATTTGCAATGAGAGGGGTCACAAATCTGGAATCTTGAGACTGTATTAGGAAGCAGGGTTTTGGATGCAGGCAGAATGAGTCAGATGGTAATTGCTGATTTATTTTTCTTCTGTATCAAAGCTTCACGAAAAAAAAATAATCCTTAGTCCAGTTCTCTGTGGTAGAGTTAGAAAAGACTGCTTTGGGGTAGGCCAGGTGTGGTGGCTCACTTCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCCAGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCAGACACCTATAATCCCAGCTACTTAGGATGCTGAGGCAGGAGAATTGCTTGAACATGGGAGGTGGAGGCTGCAGTGAGCAGAGACCATCATGCCACTGCACTCCAGCCTGGACAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAGACTGCTTTGGGCAACTTCTCCTGGGATGCCCAGGGAACATGGTATGGAGGTCAGGATAGAAAATAACATCTGCTCTAGTTAGAGGCAGGAAGACTTAGATTTGAGTTAAGGGCCAGACAGACTTATATGTTCCAGATAACCTGGAACATAAAATGGTTGTTCATAGTGAGCCAACTGGGGCAGCATGCACAAGGGTGTCAGTCTGCCAGAGGAAGACTGGCAGAAGGCAATTGAACGGAATTATAGCTGAACTGGCAGAAGGCAAGAAGGATTCCGGAAAGTATATGGGAAAGACCTAAGGAAATATTTCAGCTTCTTCACAATGTTATTTGCTTCACAGTATAAGGCAGAGTAATTTTTTAAAAAAACCTAACTTAAAACAACTTTGACAAGAAACTGCCTTTCTATTTCCTCCCATAGTATAATAATGCAAGAAAATGTCTATAGATGAGCAGTATTACCTTTAGCTTTAAGAAGCCTGATATTTTCTTGAAACTCAACCTGTATTTTGCTGATTAGAAAAATCTTTAGAGAGAGTGAGTTTGATTGAATGCCAGTGAATGCATAGTTTCTTAATGGTGATTAAAATTGCATTTCTCTCTGCATTCCAACTCATCCTTCAGGGATGACTTCACAAAGAAATTAGACTTGTCAGAATTTCTGTACACATAGGAAGAAATATAATTTGTTGTCTAGTTGAGAATTCTGTTTCCATAATTCATGTCTACATCTAGCTATGTGACAACATAGAAGTCCTGGTCTACTTTCATTTTTTTCCCAGCATAATAATTAATAATGCCTGCCTTTCTCTCTCAAAAATGTCCCAATATGGACAGTAAATTACTCTACTTAGAGCATATTTTATACAAAGCATTTTAATTTTAGTTTAGCAGGCTCCCACACCACCATTAGATATGGATTGAAAAATCTCCTGATAAACAACTTTTAGGACCCTTGATGCAGTATAAAATAGCTAAATACTTGGTTCAAAAGCTGCAATTAAAGTGAACTCTAAGGGATTGGCCAGGTTGTTTAGTCACATTAAAATTCGTGTGTAAGTATTGAAATAAGTGGGTTTCTAGAAAATGTTTTTGTTTCTTTAGACCTCTAAAAAATGTTTTGAAAGGAAATGTAACTATAAGTGTACTTAAAAAGGACATCAGTTTTTCCATTTTTAAAAAGTATATTACAGCAGGCCCATACTTTCCTCAGTGTGCAACATTTCAGTGATATCAGAGACAAAGCAGCAGGCCAGACAAATTAGAAAGCCCTAGGATTCTTTTCGTTTTTGTTTTTGTTTTTCTTTTTTTCTTTTTCTTTTCTTTTTTTTTTTTGTTTGAGACAGGGTCTTTCTCTGTCGCACAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGTAACCTCCTCCTCCCGGGTTCAAACAAGTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCACCACCATGCCTGGCTAATTTTTGTATTCTTATTAGAGATGGGGTTTCACCGTGTTGGCCAGGCCAGTCTCGTACTCCTGGCCTCCTGTGATCCACCCACCTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGTCACCGCACCCAGCCTGAAAGCCCTGGGATTCTAATAATCTCTTTAATAAATTTCACAAATTCCCCTATATGTATTCATTCACTTATTTAGCAAATATATTTTGAGTACCTACTATATGCCAGATACTACACTAGGGATACAGCAATAGAACAGCTGAAACAAGCTCTCTGCCTTCATATAGTATGTATTGTAATGGAAAATAAAATAAACAGAGCAAAATATAATTTTTGTGAGCAATAGCAGCCATTAAAGAAAAAGGTAGAGAAAGAAGGTAAAGAGTGATGGAGCAAGTGTGTGATTGGTGCTAGTCTAGATCACATGTCAGAGAAGGGCTCTCTGAGGCATACATTAAACAGGCCTATATGAAGTAAGGGAGGCAACAGTGAGAAGATTTTAGGAAAGAGTGGTTTTGAAGGAGGAAGAACAAGAGCAAGTGTTCTGAGGTGGGAATGAGTTTGAGTGTTTGAAGAACAGCACAAAGTTAATATGACTGGAGTAGGTTGAGCAAGAAAAGGTGCAGAAGATATATGAGGGGCAGAGCGGGTTGGGAGTAAGGGGAGAACAGGGCCCAGCTCATGCAAAGTCTGCTAGGCTATGGTAAAGTTTAGGATTTTACTCCAAGAGAGCAAAGCATTCTTACAGATAATAAAGTCTCTCATCTTCCCGGCGTTTGATAGTGGAATGCACACATTATTTTTCTACTTTGAAGATATTCAGAGAGAGTGGCAAACATTTGGCTGGAGATTTCTGACTCTAGTGGTGCAATAGATTGTCATCAGTTGTTGACTTCTGACCATGCAAATCTGGGTGGTGGAGAACTCCAACCTCAAATCTGAAGTCTGTCTTACATGGAACTTTGAGATGTCATCTTGTTTGATTTTGCCAAGTCTTTGAGCTTTGAGATTCAGCCTTTGTCTGAATGGAGGAGGGGAAGGATTAATTTTTGCATCATTCCCTGAACTTGTTCTCAGATCAGGTAGAGAGACAACTTAAAAACTTGATTTAGAACAGAGAGCACTCTGTTGAGTCAGAGCACTCACTACCAAATATCTGTTTGTTGTTGCCCACACATTAACTCCTGAATCTTGCCTGAGATTAATGCTGGATTAGCTTTAGGGTTCTCAGTAGGGATGTCTTTCCTGAGCATGTTTCAAAACACTGTTCATCATATTTAGATGAAATAGATACACTTCTTAGTCTTCTCTTCTATTGATGTGTTTTCCAGTCTTTCATTGCCTATGTGACTGTCCTCTGAAATGTCCCAAAGAATTTGACAAGTTTTTTTTTGTGTGGACCCTGTCCACCAAATATAACTGCAATTTTAATAAGGTTCTTACTAATATTAAATATAATGAGAGAGCTGCCTGATAATTTTTACACTAAACGTTTATATTTTTTCGTTTTACGCATATTTTTTCTCCTTTCAACAGCACTGATTGAACATTGGCGATAAATGCTTCACTGGTGTGTACGTTGTACTCACTCACCTTCAATCCTTCCCCATGTTGTTTGAATGCAGTTTGCTTTTTCTTTCCAATGGAACTAACTTTTATTTGGTACCCACATTTTGTTCAATTTGTTTTTATTATGATAAAGTAATGTTATTATCTAATATCACATTGGTAATTATAATGTTACTGAGTTTAATGTTTTGACCAGGAAGTTTGTGTTGAAGAACCATGTCTGTTTGTGGAAAATGATATGATTACACCTATTTGTGTGTGTGTGTGTGTGTGCCTGTGTGAAATAG
Seq C2 exon
AGGACTATACAGAAGACATCGCTATGTTTGCAAATAGTTGGTCGGTGCAAACTCCAGATGACACCAAATGTGTACTCACACCCTCAGATTTTCCAAATCCGTGCTCCAGTGGAATGCCAGCATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-C12orf64:NM_173591:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

NA

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0009420=VWD=PD(45.3=97.1)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development