GgaINT0111078 @ galGal4
Intron Retention
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39702326-39705352:+
Coord C1 exon
chr1:39702326-39702531
Coord A exon
chr1:39702532-39705221
Coord C2 exon
chr1:39705222-39705352
Length
2690 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TGGGTGCTCTTATCACACAGGAG
3' ss Score
7.55
Exon sequences
Seq C1 exon
ATTAATGTTGCCACAGACAGTTGGAAATGTTTTCTTTGAGAGATTGGCTGACTATATTCTGGTGAAAACTACCTTTGGTTTTTCTCTTGCTTGGGATGGAAACTCTGGTATTTATATTAAGCTGACAGAAGATCATCACGGAAAACCTTGTGGCCTCTGTGGAAATTTTAATGGTGATAAATATGATGACCTGATACTGCAAAATA
Seq A exon
GTAAGTAAATAGCTAGGAAATACACTCTTACCTTGTGTAAGCAGCTCCATGTTCACTTATAATCTACTATGGAGGAAAAGACAGAGTCCTTATTTCAATAGAAAATAGAATATGTGCTCTATTCTTCATTGCCAGTCAAGATGTTTAGGGAAAAAAATCCCAATTGAAGAAACTATTTATATGTGTGCTTAAGCCTTTTCTTGCTCAGCAAAGTACTTGGTGTATGTTTATCTTAGCTGATGGAAGTGCCTTGAAATAATAAATAAATAAGCAAATGCTTGCGGTTTCCTCTGTGTTTAAGAATGGAGGAAAGAGTGAAAAGCCAAAATATTAATATTTGGAAAAAACACCGTGTTGAGTCATTGGTTTACATTGCCATCATAAAAATATGAGCTGAAATATTTACATTTAAAAGCACTTTCCAGAAAGTTCCTCATATCTCTCTGTTGGTATGTTGCATTAAGGGCCTCCTAAAACCCTGTATGGTGAGTTGCCCAATGCTGCCTCATGTGAGGAAGAAGTGACTTACTAAATTGGTAGAATATTCTGTAATCTTTGTAGTTCTATATAGTTGTACTCTCTAGAAACTTTTGACCTACTCATAACCAATGTGAAGAAAGAGCAAACATAGGAATTTAGTCTGATAAAAAATAAAGATAGAACTGTTTTACCATTGATTGCTGAGAGAATCCAATCCCATGACCCTACAGTTTAAGTCACAAAGGTTATCTCACTGTAACTTTTTTTTCCCTGCTCTGTTTTGCTCTATGCATTACGGTTGATAGGCAGGAGGTGTTTGACATTTTGAGTGATGGAAGAAGCAGCCCACATTTCTTTGCACTGTGTTTAAAAATCTGCCAAATATTGATTTCTAGTATTTCTTCTATCATGAAAGAAGTGCATTCACTGTTTCATACCTTAACTGCTGCACGCCACAGTTTAGTATGTTTTATAACTAGTTAAAAAATGATGAAAAATGGAATTCAGAAGAGATAATGAACTCACACAAATTCTTTAAAAGTAATTATCTCAACATTTTTAAATGTGTTCTCAGTTATAAAAGACTTCAAGTATGACAGCTCTTTCGTCAATTTCAGAGCTACATGTTTTTTCCATTGTCATTTCTTCTGGTACTTCTCTTTGTCAGAAATGACAGTATTATTGCAGTGTACAATCCAGAGCACTGTGAATTACTTCAACCTTGTACCAGTTGTATGGTAACCTTGGTACCTTGGCTCTGTGCAAATACAATGCAAGATGTTCTGCTATCTTCACATAAATAGACTACTAAATTAAAATTGCTTCTAAGCTGCAACTTTTTTCTAAATGTTTCAGTTTCTGGGATCATTTGGGATGATGATTTGTCTCCCCTGACCATACTATCCCAACAGTAGTGTAAAGGAAGTTCTTACATCTATCCTGAATCTTGCAGAGTCTGAATGCCCTGTGTTTGCATTGGCTTACATAATGAAGCTGCGGAGTCTCAATTTCAAAGCATAGTTTAAAAAATCAACTCCTTTTCTGTTTCCTTAATCTTCACCTTTCATGGCATCTTTATATTTCTTTAATACATGGGACTGTATCTGTGCATAAAACCATTTTAAGGACAGTGATTCTGTATAGTGGGATTTTTTTTTAAGACTTAGAATGTTTTTTTTCAAGCCACGTCAAAATGAAAATAAAATCTCTTTAATGTTTCTTCAGAACCAGGTTTGTGTCAACAGGTTTACTTCTAGATAAAAAACAGCCTTTTAAGATTGGGAAGGGTTTTCAGAACTCTTCTGTCAGAAAAGGAGAAAATTTTTAACTCTCCCTGGCTGTTAAGTAAACTAGATTGGTTTAGCTTTGTTTATCTGTGGAGATCCAAGCTGAATATCTGATTATTGTGTTTTGGGAGTTTCCACATTCCAGAGTGTCAAACTGTGCACATCTTGTGCTGAAAGAAGTTGAATTAAGTTTTGAATAATACTGTTCTATGGAAAAAAAAAAAAAAAAGCAACTAACTTCATTCCAATATTCTGTCTCCTAAACATACATAGATAACAATTACATAGATATTAATTATTATTCATCAAAGCAGAGGCAGTAAACTCTCTCTAGCACACTTAAGAACATAGAGAAAATGTAATACATAGTTCTTGCTGCAAAAATATGGGAATTTTGGGTTTGTTCTTTTACTGCAACCTTCTTGCATGTTCTTATGTCTCTGTTGCCATGACTTCCAATCATGCATCTCATTCATTCATTCTCCCATCCCCATGCTGTTAGGAGAATTGGGCAAGTATTGTGTTCATCACAGGGGTTTTCTGCAGAAGGGGAAAGAGTGAGATAACAGTGCTAAGTGACCACTGTGAAATGTGATGAAAGTCTTAAAGTGTTTTAAAAAAATGTAATTTTTCTTAAGCATTCAGTGTGTTACAGTAGTTCTTATTTGTATATTTGTTATAAAAGTGTCATTAATTGTATTTTAAAAGAATATTTGCCTCGTACATATATATAAGTTTTCATCTAAATGTGGTATAATATATTGTCTAATGTTAAAAAGGAAAACTCAACTTTTTTAAAACTCTACCTACTCTATACATATCTGTGTCTGAAGTAACAAATGTTTTTAAAAACATTCAGAAATTTCCATGACATCTTTTGAGCTTGTGCTGATAGTCTTTCTTCTGGGTGCTCTTATCACACAG
Seq C2 exon
GAGGTGAATATACAGAAGACATTGCTGAATTTGCAAATAGCTGGGCTGTGCAAATCTCAGATGATGCAGCTTGTTTACCTACTGCCTTAGATTTTTCCAGTCCTTGCTCAGCTAATGCAGAATCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342:ENSGALT00000017091:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(45.7=100)
A:
NA
C2:
PF0009420=VWD=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]