RnoINT0109560 @ rn6
Intron Retention
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187116638-187116933:-
Coord C1 exon
chr2:187116845-187116933
Coord A exon
chr2:187116762-187116844
Coord C2 exon
chr2:187116638-187116761
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TGGCTTGTGCTCCCCAATAGATT
3' ss Score
7.41
Exon sequences
Seq C1 exon
ATGTCTCTCCGAGCTACAGTCACTACTATTCCAACCCTAGCTACCACACACTGTCTCAGTGTTCTCCTAACCTTCCACCCCCTAACAAG
Seq A exon
GTCAGTGCATTGGGGTGGGGGGTGCTCTGTGGGTGACATGTACCTCTCAGGAGAGCCTCACCGTGGCTTGTGCTCCCCAATAG
Seq C2 exon
ATTCCAGGCAGTCAGCTGTTTGTCAGCTCCCAGGCATCTGAGCGGCCAAACAGAAACCATGGGCGAGATAACCACGCCACACTGCCCGCTGACTGGAAGCACCGACGGGAGTCCCATGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243:ENSRNOT00000019502:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTCCGAGCTACAGTCA
R:
CAGTGTGGCGTGGTTATCTCG
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]