GgaINT1021183 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:405329-405792:-
Coord C1 exon
chr25:405686-405792
Coord A exon
chr25:405441-405685
Coord C2 exon
chr25:405329-405440
Length
245 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GCCTCTTGTTTTGGCTGCAGGTC
3' ss Score
9.53
Exon sequences
Seq C1 exon
ATGTGCCACCGAACCACACGCACTACTACTCCAACCCCAGCTACCACACGCTGTCCCAGTGCACATTGCCTGCCCACAGCAGCCAGGACAGAGCCAGCTCCCTAAAG
Seq A exon
GTACGGCACAGCACGGCGGCATGGCACAGCGTGGCACAGCACGATGCCGTGCCACGTCGTGGTGCATCATGGTGCATGCCGGTGCAGAGTGGCACAGCTTTGCACAGTGCACAGAGGCACAGGGCACCATGTTTCACCGTGCTGCACGACAACAGAACGGTGCAGCAAGGCGTTGCGCTGTGCACCACAGCACGGCACCACTGCTGGGAGCCCTGCGGCTACGCTGCCTCTTGTTTTGGCTGCAG
Seq C2 exon
GTCCCCACCTCCCAGCCCTTCCATGGCGCAGAGAGGCCTTATGGCCCTGAAGGCAATGCCACCCTTCCCCCTGACTGGAAGCATCTGGGGGCACCACCACAGGAAGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAACCACACGCACTACTA
R:
CCCTGGCTTCCTGTGGTGG
Band lengths:
212-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]