DreINT0094986 @ danRer10
Intron Retention
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16192000-16193639:+
Coord C1 exon
chr10:16192000-16192115
Coord A exon
chr10:16192116-16193515
Coord C2 exon
chr10:16193516-16193639
Length
1400 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AATTTTCTTCTGCCTGACAGATG
3' ss Score
9.55
Exon sequences
Seq C1 exon
AGTCACTCCCACAAACAGAGGTCCTTCCCAACAGTAACTATTTCTCCAACCCCAGCTACCACACGCTGACCCAATGCAGCAGCCCACCTCACATCAATAACATACCCTATGGAAAG
Seq A exon
GTGGGTAACTCTAGTACAGGGGTGTCCAAACTACGGCCCGCAATCAGTTTTGTGGCGGCCCGCAAGGCTTTTTATAAATATTAACAGAATCTGGCCCGCTATACAAAAATGAACATAATTCAATAAATAACCACCGAGTGTCCCTATCACATGCCTTCAATTAAGCAGCAGATCTTGGTATGAACGAACCGACGAAACTGAAGGAAACACAATTGATAACATTTTGATTCACATTTTGGCAAGCCATGGCAAAAACAAGAGAAAGAAAAATCAACAGTAAGTGAAGGAAGTTTCAGTCACGTTGGGGAAAAGAATATTTCTTCACAGAGGTCAGCGGGAAATGTATCTGTTTAATTTGCCGGGAATCAGTTGCAGTAATGAAGGAATTTGATATTAAAAGACATTATGAAACAAAACATCAGGCCTTCAGCTCTTACACTGGTGCCGAACGAAATCAATAAGTAAAACAATTAGCAGCTGCCCTATCAGCTCAACAACAATTCTACACTGGCTAGTTATGAAGTGTATATATATATATGCGTGTCTGTGAAGTATGTAAAATTTGGCCCGGGACAACGTTTTTTTTTGTTTGTTTTTTTTTGCATCTGGCCCTCAGCCCAAAATGTTTGGACACCCCTGCTCTAGTATAACACAACACTCTTAGAAATAAAGGCACATGAGCTGTCGCTGGGGGTATACCTTTTCAAAAGAAACAAATTTGTACCTAAAAGGTCCATATTAATACCTCAATGGTACATATCAGTACCTAAAAACTGGAAGGCTAAAACAGGGCAAAAAAGATGATCAAAAATATCTGAATTGTAGACCGCTAATTGTTGAATAGTTCTGGGAACACAGGACTAATAAATATGGAGGGGGATTTATATTTTACTAAATACTGCTTTAGAATAAAGCATTTACTTGGATTACCCTGCCTGTGTGTTGTTAGAAACAGATTTTAGTTTAGTGAAACTAAACTGTTTCTGCGACGCAGTGGCGCAGTAGGTAGTGCTGCCGCCTCACAGCAAGTAGGTCGCTGGTTCGAGCCTTGGCTGGATCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTTGCATGGGTTTCCTCCAGAGATGGGTTGCGGCTGGAAGGGCATCGGCTGCATAAAAACATGCTGGATAAATTGGCAGTTTATTTCGCTGTGGCAACCCTGGATTAATAAATGGACTAAACCGAAAAGAAAATGAATGAATGAACTGTTTCTGCCTTAAAACCTGCCATTTTTAAGAAACCAATTGCAAATTCCTAAATTAATCCAAATTACCTTCTCTGTAGATTTCTGGAGTTGAGGAGCTATGTGGAATGTCGTAGAAAGGCACTTGCTATAATTATAATTTTCTTCTGCCTGACAG
Seq C2 exon
ATGAACAACAACCAGTTGTTTGTGAACCTGAAGAACACTGAGCCGAGGAAGCGGCTTTCCCTGCTGGATCACACAGGAACTCTACCAGCTGACTGGAAGCAAGGCGGATCCTTTAGTGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229:ENSDART00000043936:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCCCACAAACAGAGGT
R:
CGAGTTCACTAAAGGATCCGCC
Band lengths:
239-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]