Special

DreINT0094986 @ danRer10

Intron Retention

Gene
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16192000-16193639:+
Coord C1 exon
chr10:16192000-16192115
Coord A exon
chr10:16192116-16193515
Coord C2 exon
chr10:16193516-16193639
Length
1400 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AATTTTCTTCTGCCTGACAGATG
3' ss Score
9.55
Exon sequences
Seq C1 exon
AGTCACTCCCACAAACAGAGGTCCTTCCCAACAGTAACTATTTCTCCAACCCCAGCTACCACACGCTGACCCAATGCAGCAGCCCACCTCACATCAATAACATACCCTATGGAAAG
Seq A exon
GTGGGTAACTCTAGTACAGGGGTGTCCAAACTACGGCCCGCAATCAGTTTTGTGGCGGCCCGCAAGGCTTTTTATAAATATTAACAGAATCTGGCCCGCTATACAAAAATGAACATAATTCAATAAATAACCACCGAGTGTCCCTATCACATGCCTTCAATTAAGCAGCAGATCTTGGTATGAACGAACCGACGAAACTGAAGGAAACACAATTGATAACATTTTGATTCACATTTTGGCAAGCCATGGCAAAAACAAGAGAAAGAAAAATCAACAGTAAGTGAAGGAAGTTTCAGTCACGTTGGGGAAAAGAATATTTCTTCACAGAGGTCAGCGGGAAATGTATCTGTTTAATTTGCCGGGAATCAGTTGCAGTAATGAAGGAATTTGATATTAAAAGACATTATGAAACAAAACATCAGGCCTTCAGCTCTTACACTGGTGCCGAACGAAATCAATAAGTAAAACAATTAGCAGCTGCCCTATCAGCTCAACAACAATTCTACACTGGCTAGTTATGAAGTGTATATATATATATGCGTGTCTGTGAAGTATGTAAAATTTGGCCCGGGACAACGTTTTTTTTTGTTTGTTTTTTTTTGCATCTGGCCCTCAGCCCAAAATGTTTGGACACCCCTGCTCTAGTATAACACAACACTCTTAGAAATAAAGGCACATGAGCTGTCGCTGGGGGTATACCTTTTCAAAAGAAACAAATTTGTACCTAAAAGGTCCATATTAATACCTCAATGGTACATATCAGTACCTAAAAACTGGAAGGCTAAAACAGGGCAAAAAAGATGATCAAAAATATCTGAATTGTAGACCGCTAATTGTTGAATAGTTCTGGGAACACAGGACTAATAAATATGGAGGGGGATTTATATTTTACTAAATACTGCTTTAGAATAAAGCATTTACTTGGATTACCCTGCCTGTGTGTTGTTAGAAACAGATTTTAGTTTAGTGAAACTAAACTGTTTCTGCGACGCAGTGGCGCAGTAGGTAGTGCTGCCGCCTCACAGCAAGTAGGTCGCTGGTTCGAGCCTTGGCTGGATCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTTGCATGGGTTTCCTCCAGAGATGGGTTGCGGCTGGAAGGGCATCGGCTGCATAAAAACATGCTGGATAAATTGGCAGTTTATTTCGCTGTGGCAACCCTGGATTAATAAATGGACTAAACCGAAAAGAAAATGAATGAATGAACTGTTTCTGCCTTAAAACCTGCCATTTTTAAGAAACCAATTGCAAATTCCTAAATTAATCCAAATTACCTTCTCTGTAGATTTCTGGAGTTGAGGAGCTATGTGGAATGTCGTAGAAAGGCACTTGCTATAATTATAATTTTCTTCTGCCTGACAG
Seq C2 exon
ATGAACAACAACCAGTTGTTTGTGAACCTGAAGAACACTGAGCCGAGGAAGCGGCTTTCCCTGCTGGATCACACAGGAACTCTACCAGCTGACTGGAAGCAAGGCGGATCCTTTAGTGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229:ENSDART00000043936:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.051 A=NA C2=0.071
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCCCACAAACAGAGGT
R:
CGAGTTCACTAAAGGATCCGCC
Band lengths:
239-1639
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]