GgaINT1017728 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56265594-56266015:+
Coord C1 exon
chrZ:56265594-56265721
Coord A exon
chrZ:56265722-56265891
Coord C2 exon
chrZ:56265892-56266015
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCTATCTTTCTTTGAAATAGGCA
3' ss Score
8.86
Exon sequences
Seq C1 exon
AAACCATCCCTCATAGTAATGGTGGAAATGCTAACAGTCACTATTTCTCTAACCCCAGTTATCATACTCTAACACAGTGCACTACACCACCTCATGTCAACAACATGGACAGGCTGACTCTGGCAAAG
Seq A exon
GTAAAGCAGAAAAATCTAAATGCTTCTGTGTAGGTTAGCCACTGAATTATGTTACTCTATTTCTTTTGTCTCTCCTTGGATTTATTTTGCTTTCCTTGATTATCACCTGGTAGAACTCAGCAACCCTCACGTTAGTTTCAGGTTCCATCATCTATCTTTCTTTGAAATAG
Seq C2 exon
GCAAAAAACAATCAGCTATTTGTGAACCTTAAAAATGTGGAACCTGGAAAGCGAGGCACTGTCATGGATTACACTGGAACACTGCCTGCTGACTGGAAACATGGTGGCTACCTCAATGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCCCTCATAGTAATGGTGGA
R:
AAGCTCATTGAGGTAGCCACC
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]