BtaINT0091657 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27831150-27832802:-
Coord C1 exon
chr7:27832681-27832802
Coord A exon
chr7:27831274-27832680
Coord C2 exon
chr7:27831150-27831273
Length
1407 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTTGTTTATATTTTTAACAGTCA
3' ss Score
6.07
Exon sequences
Seq C1 exon
AAACCCTTCCTCATGGCAACGGTGGAAATGCTAACAGCCATTACTTCACCAATCCCAGTTACCACACGCTCACTCAGTGTGCCACATCCCCTCACGTCAACAACAGGGACAGGATTGCCAAG
Seq A exon
GTGAGGGGAGATGGTCCAGGTCACTGGGCGGGGTAGGGGGGGAGAGGGGGAGAGGGATGGTGGGGGGGGGAGGGGGGTGGCAAGAGCAAGGAAGCAAGGAACAGGCATGCCTGAGGGCTGCAGTTGGCCAGCTGCCATTCCACATACGTACATCAATTACCTCATTTATTCCTCCAAACAATCCCGTGGGTGTGTATTAGTATCTCAAGTTTACTGACAAAAAACCCTAAGGAACAGGGAACTTAAGTCACTTCCAAACATAGCTTGTGAGAGAGGCTGCAGCGAGGTGAGTCAGTCTCTCTGTCTCTGCAACTTGTACTGTTTCCATTGCACTTCTTTTGGAAAATGTTTCTAATATTGCATGTGGTTTTAAAATAATGTCTCATAGCAGACCTATAGCAGACTCTGGTCTGGGTAAAATTGGCAGGTTTGTCTTTTGTGATCCCCTTCTGGTACCCTTTCCTGGCCACCTGTACTTGGGTAATGACAACAATAATATGCATTTATTTATTTTGATTGAACCATACGAAATTGCAGTTTTGTGGGTAAAAAGTTACCAAACAAAACAACCTAATACTATGTGCCAGGCATTTCTAATCATTTTACAAATATAAATTTGTTTAATCTTTATGCCAATCCTATAACTTGAGTGATTATCCCATTTTACAGAGGCCCAGAAAGATTGGAGGCCCAGGGCTGTCTAGAAGCTGGAGCAGCTCCTCTGGACCCATCCAGCTCACCACCAGGCCTCTTCCAGAGTGCTCCAAAATCCCAAACATTTCTCTCTTCCAACTGTGCTCGAGTTATATTTTCAATCTCCATTGTCTAATTCCAGCTCTCTATTAGAAGAAAACCAAGCTAATTAAATTATTCAGTTGCAGTTAAATTAATGCAGCTAGATTTTAATTATAGTACCTCATAGTTAAATAGCATTTCATATTCTCCAGAGACTTTGGTATTTATCGTACGATTTGTTCTCATTCCCATTCAGGGAGGGACCAAAGTTGATCATATTACCTTCATGCTTATAGCTAAGAAAACTGCTAAGAATGACTCCTACATGATTATACAGTGTTTGATGGGAAGGCTCAGGAATTGGGTTTTTTTTTTTTTTCAGTTCAAAGTTCCATGTATGTAAATCCAAGTGAGGCCTAATTGGCACAGAGCACCAACTTAAAATGAAGAAGTAAGGTGATGGAGGGAATGGTTGGGGCTGAGGGGCACCTACTCCTGCTGCCTCTAAGTCCCACCAGGTCAGAAGCTTCACCTCTGTCCCTTGGTGCCTCCTCATGTAAGGACCAGTCCTTGATATGCTCCATGGACCTGCTTTCCTTAGATGGGTAACACTGCACTGCGCCATATTGTATTTTCTTTTTTAAATCTATTTGTTGTTTATATTTTTAACAG
Seq C2 exon
TCAAAAAATAATCAACTGTTTGTGAATCTGAAAAATGTGAATCCCGGGAAGAGAGGCCCTGTGGTAGATTATACAGGCACGCTGCCTGCAGACTGGAAACACGGCGGCTACCTCAACGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTTCCTCATGGCAACG
R:
CAAGCTCGTTGAGGTAGCCG
Band lengths:
246-1653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]