RnoINT0091320 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52354780-52355999:+
Coord C1 exon
chr18:52354780-52354907
Coord A exon
chr18:52354908-52355875
Coord C2 exon
chr18:52355876-52355999
Length
968 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTGTCTGTTTGTTTCATAGTCA
3' ss Score
9.06
Exon sequences
Seq C1 exon
AAACCCTGCCTCACAGCAATGGCGGAAATGCCAACAGCCACTACTTCACCAATCCCAGTTATCACACACTTAGCCAGTGTGCCGCGTCCCCTCATGTGAACAACAGGGACAGGATGACCATTGCAAAG
Seq A exon
GTGAGAGACGATACCTCAGGAATTGGAATGTGGGGAGGGGAGAGGGATGAGGCACACATTCAGATAGTTCCTGTGTCCTGCTCACTTGACTCCCCCTAAACTGTCCTGTGAGTGTAGCTGAACATCCCCAGAGGCCTCACCTCTAAGTAACAATGGCTTCCAGTCTCTTCCGCTGGTGCTGTGTGTGGTAAGGTCTCGCCAACAACAACCCCACTGTTTATATTACGTCAAGGATAATGTTCTTATATGAGATGAAAATGAGATCTCTTGATGATGTCATTAAAAATGTAAAAATCCATTGTGAAATCATCAAGTGTATCCTCTCTGACCCCCCGTGACTCTGTGTCCTCCCAGGATGCTCTGAGTTCCCAATGTACCTTCCCACTGTGCCCACCCCTGTCTCCAGTCTCCATTGTCTGCCTCACCACGGTCCAGATTTCTATTAGGGAAGGAAGGAACAGAACAAAAGAGGGGGGAAATCAAGTTAATCCATTTAATCCACTGTCATTAAATTGACAATGCTGGTTTTTCACGGCAGCACCTCAGAGTTAACTAGCACTCCACCTTCCCAAATACCGTGCTCGTCATCCTACCGGGTCTCCTACCGGGTCTCACGGTCATGTGTATGCCCACCGGAATGGCCAAGGCACTGGGGACTCACAGCATCATGGAGACTTTCATAAAACTTACACCCACAATTCCTTTCTTCAATTTAAAATTCTTCATTTATAACCAGAAATGATGTTTAATTGGCAAAAAGTGACAGTGTAAAATGAGCACCTTCAGGTTACAGGGCTGGGGTACGGGGAAGAGATGGATAGAGGGACGGGCATTCTGCATGCCAGGGATGGGTTTCCTCACCTTTTCTCCGCCTTAGTTGAGGGGGCGACCTTGCCATAAACTCTGAACTTACTCTCCTCCAGTGTGTTCTCTTCTTAAACCATCTTCTTTGTCTGTTTGTTTCATAG
Seq C2 exon
TCAAAAAACAATCAACTGTTTGTGAATCTTAAAAATGTGAATCCAGGGAAGAGAGGCGCTTTGGTGGACTGCACTGGGACGTTGCCAGCTGACTGGAAGCAAGGAGGCTACCTCAATGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTGCCTCACAGCAATG
R:
TAGCCTCCTTGCTTCCAGTCA
Band lengths:
238-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]