MmuINT0097618 @ mm9
Intron Retention
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57448937-57450174:+
Coord C1 exon
chr18:57448937-57449064
Coord A exon
chr18:57449065-57450050
Coord C2 exon
chr18:57450051-57450174
Length
986 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTGTTTGTTTGTTTTGATAGTCA
3' ss Score
6.18
Exon sequences
Seq C1 exon
AAACCCTGCCTCACAGCAATGGTGGAAATGCCAACAGCCACTACTTTACCAATCCCAGTTATCACACACTTAGCCAGTGTGCCACATCCCCTCATGTGAACAATAGGGACAGGATGACCATTGCAAAG
Seq A exon
GTGAGAGAAACGCCTCAGGGATCTGAACAAGGGGAGGGGAGAGAGACGAGGCACACATTCTCACCACTGCTAGATACTTCCTGTTTCTTGCCCACTCGATTCCTCGTAAGCTGTCCTCGCAGTGTGGCTGAGCAACCCCAGAAGACTCACCTCTAAGTAACAATGGCTTCCAGTCTCTTTCAAGGGCACTGTGTGTGTTAAGGTATTGTTGGCAACAATCCGCACTGTTTATATTCCGTCAGGGATAACCTTCCTCATTTTACATGAGATGAAAATGATATCTCATGATGATGTCAATGAAAACGTAAAGATCCATTGGGAAATCACCAAGCTTATCTTCTCTGACCATCTGTGCTTCTGTGTGCTCCCAGGATGCTCTGAGTTCCAAACGTACCTTCCCACTGTGCCCACTCCTGTCCCCAGACTCCATTATCTGGCTCACCACTGTCTAGGTTTCTACTAGGGAAAGAAGGAACAGAACAAGAAAGGGGGAATATCAAGCTAATTAATATCAAGCTTGGCCATCATTAAACTGACAGTGCTGGTTTTTCACTGCGGTACCTCAGAGTTAAATAGCACTTCGCCTTCCCAAATACCATGTTCATCATCCTGCCAGGTCTCATACAGGACCTCACGGTCATGTTGATGCCTACTGGAATGGCCAAGGCACTGGGGACTCACAGTATCATGGAGACTTTCATAGGACTAACACCCACAATTCCTTTCTGCGATTTAAAATTCTTCATTTATAACCTGAAATGAAGTCAGTTGGTAAAAGGTGACAGTATGAAATGAAGACTTCCAGGTCACAGAGGGATCTGGACAGAGGGATGTGCACTCTGCATGTCAGAGATGGGTTACCTCACCTATTCTCAGCCTGAGTTGAGGGGAGGACCTTGCTGTGAACTCTGAACTTACTCTCCTCCAGTGTGTTCTCTTTTTAAATCATCTTCTTTGTTTGTTTGTTTGTTTGTTTGTTTTGATAG
Seq C2 exon
TCAAAAAACAATCAGCTGTTTGTGAATCTTAAAAATGTGAATCCAGGGAAGAGAGGGACATTGGTGGACTGCACTGGGACATTGCCAGCTGACTGGAAGCAAGGAGGCTACCTCAATGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-Megf10:NM_001001979:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCTGCCTCACAGCAATG
R:
CAAGCTCATTGAGGTAGCCT
Band lengths:
252-1238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: