RnoINT0112255 @ rn6
Intron Retention
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24814311-24817098:-
Coord C1 exon
chr19:24816904-24817098
Coord A exon
chr19:24814421-24816903
Coord C2 exon
chr19:24814311-24814420
Length
2483 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTGCCCTCTCCTGGTTTCAGCTG
3' ss Score
9.32
Exon sequences
Seq C1 exon
GGACCCTGGAAGTACGAGTGGTGGGCTGCAAAAACCTTCCCGAGACCATCCCTTGGAGCCCTCCCCCCTCAGTCGGGGCATCTGGGACCCCCGACAGCCGCACTCCTTTCCTGAGTCGTCCAGCTCGGGGCCTTTACAACCGAAGTGGAAGCCTTAGTGGACGGAGCAGCCTCAAGGGGGAGGCAGAGAATTCCA
Seq A exon
GTGAGTGGTCACGGGAGGCTGAGTGGGTGTGCGGGTGGGTGAAGTGGCCGCGTTTGTGGCGGTTTTTTTTTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATCTCCAATCCCTGTGGCGTTTTTTTTTATTGGTTTGTCTATTTGCTTACTTATGTAAAGCCAGGGTTTCACTGTCACCCAGGCTGCCATCCAGCTCTGGGCTCAAGAGATTCGTGGTTCAGCCAACTGAGTTGGCTGTGCCATGGCTGCCATGGCTCTGTACTAGTTACACAGTATAGGGCACTAGACAGGGACTCGAGGGGAAGGAGTGTGTACTGAGTTTGCAGAGGACCCCGACCCACATCAGGTGTCCTTTAGCTGCCGTCACCACAGTTTCAGAGGATCTGATTCTCTTCTGATTTTTTTGCTTACTACATCCATGTGAACAGACTTCCATACTTTCTCTCACACACATAATTAAAAAATAAACATTAGGTACCAGAGAGAAGGCTCAGCAGTTGAGAGCACTGGCTACTCTTGCAGAGGACCTCGGGTTAGTTCCCAGCACCCACATGGCAGCTCACAACCATCCATGACTCCAGTTCTAGAGGCTCTGTCACCTTCTGACCTCTTCAGGTACCAGGTACATACCTAGTGCATATACATACATGCATGCAAAACACACGTACACATAAAAGTAAAAGTAAATAAAAATTAAAATGAATACATTAAATAAAAAAGTATGTGACATCCATTGGGATGACTTACCAAATGATGACAAGACAAACAGAACAAAATAAAACCCCACAAATGTAGAGAAGACGTAGAGAAATCGGAACCTGTGTTGGGTGTGGGAATGCAAAGCGAAAGCCATCTTGGGGAGTCAAACATGCTGGGGATGCTGGGGACACAGGTCAGCAGTGGAGCTGCCTAGAATGCCCCGGTGAGTAGCCAGAGTGTGGCTGGGATAGAACTCCTGCCTAGAGCCCCCTCCCCAGTGGGAAGGTGGGGCGGGACTCAGTGAGAGAGCACCTGCCGAGAGCCTCCCCTGAGGCACTGGAGCCACTGATTAAAGGTAGACTACTTGCCTGCTATACTTGAGGTCTTGGTTCCTTTCATCTAAACCCAACAAAAGTAAAGGTGAAATTAGCAGTACATGCTCTAGCAGTTCAGCTTCTACACCCTCAGAGAACTGAGCAGGGCCTGAGTTGTTAGATGCCCAGCTTGAGGCATTATTCACAACAACAAGAAGGGAGAAGCCAGGCCACAGGTGGACAGGCACACAGTGGGCTAGGATTCAGTCTTAGAAGCAAGGATAGCATGAACCACACCGTAGCACAGAGAGACACTGAGGATGGCGCAGGAAGCAAAAGAAGCCAGTTGTAAGAAGACAAAGATGGCCTGATTCCGCTCATAGCATGTCCCAGAGCCACAGATGCACCGAGACAGGAAGTAGAACGAATGGCAGATGCTAGAGGCTAGAGAGTGTTCAATAGGGAAGGGTGTCCTCATCCTCTGGAATTAAAGCTCAGAAGCCGTCCCGAGTGCAGGGGGTGACTGGTAGTAAGAATGCAGAACTCCAGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCCGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGACGCCCTCTTCTGGTGTATCTGAAGACAGTTACAATGTACTTATATATAATAAATGAATAAATCTTAAAAAAAAAAAAAAAAGAATGCAGAACTCCATGGATTTGCACTTACACAAGCCCACAGAGGTTAGGTGGGATTTGCCTAGCATGCGTAAGACCCTTAGTTTGATTCCCAGCCCTGGATAAACCAAATAGGGTAGCACACGTCTGTACTACCAGCAGGCTTGGAAGTCGAGACAGGACAATCAGAAGTTCACAATACATAGTGTCCAGGGCCAGCCTGAGTTACACAAGACTGTCTCAAAAACAAACCAAACTCATATCTTGTGTGGTCCTACAAGCCTCCCAGAATTTAGAAGGTAGAAGCAGGAAGATCACAAGTTAAGGGCCAGCTTGGGATACATGAAACATCATCTCAAAAACAAAACAAAAATGAGGGCTGACCTGTGGTGCATGCCTATAACCCTAATACCCAGGAGGCTAAGGTAGGAGGATTCAAAGCCAATCTGGGTTAAGTAGTAAGTTCTAGGCTAGCTTGGTCTTTAGAGTAAGATTGTATCTCAAAACCCAAAAAAAAAAAAAACAAAAAAACAAAAAAACAACAACACACAAACAAGCAACCTCCTTCCCTAAACCCACAGTCGAATTAAAGGCTTTAGTGTGAAAGGCAAGTTAGCAGAGCGTCCAGGAGGGCCTCTGACAGGATTAGGAGCAAGCCCTCCCCTCCCTCTTTCCTGCTGCCCTCTCCTGGTTTCAG
Seq C2 exon
CTGAGGTCAGCACCGTGCTCAAGCTGGACAACACTGTGGTGGGGCAAACAGCCTGGAAGCCATGCGGCCCCAATGCCTGGGACCAGAGCTTCACCCTGGAGCTGGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131:ENSRNOT00000005770:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=NA C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]