GgaINT0039189 @ galGal4
Intron Retention
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14127594-14128177:-
Coord C1 exon
chr8:14127992-14128177
Coord A exon
chr8:14127704-14127991
Coord C2 exon
chr8:14127594-14127703
Length
288 bp
Sequences
Splice sites
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
3' ss Seq
TTTGTGTACTTTACTTACAGATG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
Seq A exon
GTTCAGTATACTTTCTACTTTTATGCTTATCTTTTATTTACATTTTAATATGCATGCTGTGTTTTGTAATTAGAAATACTAAATTGACTTGAGGCTGTAAAATTAGCTGTTCCTTCAGCTGTCAAGTTGTTATGGATTTAAAAATAGAAATAAAAAAGCCTGCACTATTATGACCGTAAGAACCAATTAAATATGAGAGCTCTTTTTAAGGGAAACTTACTGAAGACCTCTTTGTTTGTGGAAAATCCTCTTATAGTTCTAAGCTGAGTTTGTGTACTTTACTTACAG
Seq C2 exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAGTTAGGCTAATGGGC
R:
CCTGTCAAGTTCCAGTGTAAATTTCT
Band lengths:
292-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]