RnoINT0112276 @ rn6
Intron Retention
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248770225-248771346:-
Coord C1 exon
chr2:248771161-248771346
Coord A exon
chr2:248770335-248771160
Coord C2 exon
chr2:248770225-248770334
Length
826 bp
Sequences
Splice sites
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
3' ss Seq
ATTTACAATTGTAATTACAGATG
3' ss Score
4.99
Exon sequences
Seq C1 exon
GTACTTTGGAAGTTCGTCTCATGGGGTGCCAAGATATCCTGGAGAATGTCCCTGGACGGTCAAAAGCGACATCCGTAGCACTGCCTGGATGGAGTCCAAGTGAAAACAGATCATCGTTTATGAGCAGAACTAGTAAAAGTAAAAGTGGAAGCAGTCGCAACCTCCTGAAAACCGACGACTTGTCCA
Seq A exon
GTTCAGTAACCATGCTTTTAAATCATGCCACGGGTTACAGGGACTATCATGGAGACAGGCAAACGTGGGAAGTGTCCAAAGAGGACCAACAGATTTCTATTGCCATTATTTTCAATTTTTAAAATTTATAATAGGAAACAAAAAACCCAGCACATTTTAGTCTGTTGAAAATAAATTTGACTACATGATAAATAAAAACATTTGAAAGAATGAAATGCTGAATATCACTCTTTTTACCAAAATGAAGAGCTCCAGACACTAAGTCTTTTCCTCCTGGTAGACTCCATATTTGTTATTTTAATGGCTTGGTGACCATTAAAAACTGAACTTTTGGTACCTAACTGATGGATGAGATATTTGCTAGAATAGATAGTGACTGAGTTATCAGCTTTGAGAGGGGATGCAGTGAGTGTTGCAAGAATAAGAGACTTAGGAACACGCTGAGGACATCCCCGTCTACTGTGGTAAAGCATGCCCAGACATGCAAGTCAGAGGGGAGGCAGATGCCACGTGAACCTTCTGGAGAATAGCTCTCCTGTGTTCAGGGAAAATGGGAGAGGAATGAAAATAAAGAATGGTTTGAGGCAGTAAGTTCTCTATCTAGCAAACAGTGGAGACAATAGATGACTAATATAGATAGATGTATAAACAGGGTAGTTGATACATTCTCAAATATGCAAAATAGCATTTAGTGTTTGTTTTTATCAAAAATTGATTATAAAAAAGTTCTTTTCAAACAGTTTTCAGTTTCTTCATGCTATAAAATAGTGATAATTTTCTTTTAACAGTTTAAAAATTTTAACCAAATTTACAATTGTAATTACAG
Seq C2 exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTATCTGGAAGCCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317:ENSRNOT00000031748:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGAAGTTCGTCTCATGGG
R:
CCTGTCTAGTTCCAGTGTAAACT
Band lengths:
294-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]