BtaINT0112598 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55267352-55268611:-
Coord C1 exon
chr3:55268426-55268611
Coord A exon
chr3:55267462-55268425
Coord C2 exon
chr3:55267352-55267461
Length
964 bp
Sequences
Splice sites
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
3' ss Seq
ATTTTAAATTGTAATTACAGATG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTACTTTGGAAGTTCGTCTTATGGGCTGTCAAGATATCCTAGAGAATGTCCCTGGACGGTCGAAAGCAGCATCAGTTGCACTACCTGGTTGGAGTCCAAGTGAGACCAGATCATCCTTCATGAGCAGAACAAGTAAAAGTAAAAGCGGAAGTAGTCGAAATCTACTAAAAACTGATGACTTATCCA
Seq A exon
GTTCAGTAATCAGATTTTTTTTTTAACAATCAAATAACAAATTAAAGTCCAATACAGAGGGCTGAGCGGTGGGGACAGAAGAGTGAGAAGAGTGAAAATTGGACAACAAACTTTACAATTATGATTTCCATAATTTAAAATATCAAAAGCTGTAATGACAGGAAAATTTTAAAGGCTACAAAATTTACCATACTGAAAATGTTGGAAAACTGAATGACATTTAGCATTAATTTCTTTAGAATAATGAAATACTGAACACCACTCTTTATGACAAACTCTTTGTGTCACATCTTGATTCTTTAAATGGAATAATGACACTTCTAAAGTAATGAAGAAATTTTGATAAATAACCGTGTTAAATTAGGATTATAGCCTAGTGTCCAAGAAGTAAACTGAAATGGGGGAGTGGGTAAAGAATAAAATACAAGAGGTTTATGAAGTACTTTGGAGATACTCTGAAGTAGTCATAATCTATGATATATAACTGGTGGGAAAGGCATGTAACAATTCAGCCTAGTACAGTATATCTGCTTTCCTGTATATGGAGAGAGACTTTAGGAAAAATGTAAAAATAAAAATCATTTAAGGTAAAACCTTAATAAATAGCAAATGTAGAGGGAGAAAAACTGGGTGATTGATAATAATATATAAAAATACACCCACACATACATGTGTGGCAAACAACTACTGGCCACCTGTAAGTCCTTTCAGTAATTTTCTGATGTAAACGAAATAGCAATTAACTATTTATGTTTTTATAAAACACAAAAGATAACTTGGAAGGGTCTAGTAGAAGTGTGTGTGTGTGTTTATATACAGCTAGCTGTTTAAGATTTAAAAGCTTCAGTAGTGAGTAAGAAAAACTTATTTCAAAGTCCCATAAGACTTTTGTTGACATAAAACAGTGTTATTTCTATTTTAAAGGTTTTAAAGTACTTAATCAAATTTTAAATTGTAATTACAG
Seq C2 exon
ATGATGTCTGTGCAGTTTTGAAGCTGGACAATACTGTGGTTGGTCAAACTAGCTGGAAACCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900:ENSBTAT00000029201:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGAAGTTCGTCTTATGGGC
R:
CCTGTCTAGTTCCAGTGTAAACT
Band lengths:
294-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]