RnoINT0112547 @ rn6
Intron Retention
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46513713-46516898:-
Coord C1 exon
chr3:46516741-46516898
Coord A exon
chr3:46513778-46516740
Coord C2 exon
chr3:46513713-46513777
Length
2963 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAG
5' ss Score
3.82
3' ss Seq
CTCTCTCTTCCCTTTATTAGCTA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATGCACCCTGGCTCTTCTATCAGAATGCCGAGTACCTCTTCCACACCCATCCTGCCGAGTGGGCCACCTTTGAGTTTGTCTGCGGCTGGCTGCGAAGTGATTTCCTCACGATTTATTCTGCTCAGGAGCAAGAATTCATCCACAGCAAAATCAGAGCG
Seq A exon
GTACAGGCACACAAATCACTACGCAGAATCCATAGTGTACACCTTCTTCTGTCCTTGGGGGAGGCAATATTTTTAAAACTTGACTCCACACATTCATTTAAGTTTCCTTAAACGTCATGGCTTTCTTTTCTTTTGCAGATGTTTTCCTTCTACACAGATTGATAGGAACTAATGGAGACATAGGCTTGTTACACCTCTCTGTCCTTGGACTTCGGTTTGCTCTGTAATAGGAACGGTGTTAAGTCAGATTCCGTTCAGCGAGAGTCATTCTTCACTCTCTGGGCTCCATCTCCTTAAGACACTAGCACCACTCATGAGGGCTTGCTGATCTAATCACTTACCAGGCTTCCAAACATGTCATCTTGTGAGTTAGGATTTCAATATAAAAGACTGGGGAGGGGAGGAGCCATCTGCATTCAGTGTGGCAGGATCTACCTGTAGATTTCCAGGCAGTATTTATCTCTACCCAATATTTATCTCAACCCTTTTGGTTGTCAGTACTCTGTGGCCGTATCTATGGTGAGCATTAGATGAGCATTTCACAAGTAAGGCATCACAAGGATATGCTTGCTGAGTGGCTGGACATAGGGGAGCGTATTGATTCTAGGATGAGGTGTCAAACTTGGGGAGGAAGGTACCACTCACTTTTGAGACACATCCATCCTAAAAATGTCAAAAAGTTAGAGTGAGTAATTAGTTTGAAATAGCAGGCTTTCATATCACTTTTCTATGAAGAATAGTAAGTAGGACTGTGGAAGGCCAAAATAAAATTTATTTGGAGCATAGAAGAATGTAACTTGAGACAGGAATCCGGGCACAGACTTTCTAACAAAAATGATTCTTCTTTTGAAGAGTGCTTATGTTTTCTCTCCCTCTCTGGTAACAAACCAAGGGGTGTTAGAGAGCTTTGAATACTTCTCTTTTCTGCAATCTTCTCTTTTTCTGACCAATGATGAAAACATCAATGGTTACAAGCCCTTGAGAGTCAGAGGACGTGATTGGCTACCACTTGTATCCGTGGTATACAGTGTTTGCATTTTAAAACTGCGATTCACTATGTTAAGTTTTGTGTTTGTAAACACTTCAAAAGCTACCTATCAAATCTATTACCTCTTAAAACCTGGCAGTTCAAACCCTTAAAGTTTAAACCCTTAAGCACCTTGGTAGAAACCTAAGAGGTGACACATCGCCTTTGCTTTAGAACGCTCAGTAGATGAACGTGTTGGCTTGTTTCTGGCTCACTGGAAAATGACCTCCCATGTCAGTTAACTGGAGGCCTACTTGAGCATAGCAAAATATAACTGATTTGTGAATTGCATGCTCATATTACATTTCTTCTTTCAAACACCTATCATTAGGTTTCGGTTGTTATAGTTATACTCCTAGCATTCAAAATATTCACTTTCCATACCGGGCTCTTCTGTCTGGGCATCTTTCAGCTTCTCCCATGAAGGTCTTTACCATATACCTCACAGCTGGGATATGCTGTGGCAGATGACCATACCTTAATCCAGGCGGCAGTACACATACCACTTAAGATATGAGTGCCATAACTCCCCTTAAAGGTTCTAAACCGGGACAGTGAGCGGTCGGGTCATGATTCGGAACCACTGTTGCCCACGTGCCTCCCTTAGGTGCGGTGAAGTGGTCTCCCCACTGTATCCACAGCCAATCGCAACAGAACCATTCCCAAGTCTGGAAACAGGGCTCTGAATTCAGCATGTGGGAACATGCCTGTGAGACAGCTCCTCAGGGATCTCAAGTTGTAACGGCTCCCCCCGCGCAGTGTTCGCAGATTGCTGATCTGGCACACAGACACCCTGTTTAAGAAGTAAAAGTACACTCGTTTCAAGTCCGAACATTAGCACACTCTCAGGTCCTGTTGTAGAGTGGCTTGAAATTCATAAGGAAATAAATAATGCCTCTTAAAGACGTATCCCCAAGTCTTCCCAGAAGGAAATAAGAGTACAAATTTAAATGCATAGGGCCTTAACAGTAGTAAGGTTTTGGCATATAAAAGTTAATTTGGATTTTGATACACAGACAGAGGGGGCAGACACGCCATAAAGCACACCGCTCGAGAAGGCTCGGTGAAATCTCATCTGTCCCTTCCTCTTTTATGATTAAGGAGAAGGCTTCAATTTCCTGGACCATAAGTCCAGTGTTATATTTGCTGGACCGTGTGTATATGTGTGTGCACCTGCATGTCCATGTTTTTCAGTTTGATACTTCTCTGAGCTGAGCCTGGGTGATTAATAATTGGCTGTAGATTTTTTTTTTTAAAAAATGGATAATTTTCTAGTTGTCAGCCATTGAAATTCTGTAGTATTCTTTTGTCCTATGTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTTTCTCCCTCCCTCCCTCCCTCCCTAACTCCCTCCCTCTTCCCTCCCTCCTCTCTCTCTCTGAATGCGGACACTGTCTAAAGGTTCACAGACTACTATGCCTAGACTCTAAATCTTTATTCTGTTAATGTCTTCGTACCTTGTTTGTCAAATACATGTGACATCTGCGGCGAGCTTCCGTAAATCACCGAGAGAAGAAGCCACTAATTATACTCAGAAGAAGCACCGGTCTCTCTTTCGTGTCACGTGGCTTCTTACAGAGTTAGAAACCTTGCTTTCGAGTTGAATGGAAAGAAGATATTCTCGGTGGTTCACTACAATTCTCTTTCATAATGAACAGGAAGTGCTTTAGAATAATTCAATTTCATGTTCCCTCTAGATACCAGAGTAAAAAAAAAGATACTGGGTAAAATCGTAGTGATTCAAAAGCTAATAGTACCTCCATTGATCCAGATGGTGAGGAAAACAAGAACGACGAATGCTGACATTTTCTCTCTCTTCCCTTTATTAG
Seq C2 exon
CTATCAAAGTACGGGGCGAATTGGTGGATCGGACTTGAAGATAGAAGAGCTGGAGATCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129:ENSRNOT00000011003:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(32.4=67.9)
A:
NA
C2:
PF0005916=Lectin_C=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]