RnoEX0066617 @ rn6
Exon Skipping
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46513713-46525881:-
Coord C1 exon
chr3:46525736-46525881
Coord A exon
chr3:46516741-46516898
Coord C2 exon
chr3:46513713-46513777
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCATGTGATTTCCTTGCAGATG
3' ss Score
10.09
5' ss Seq
GCGGTACAG
5' ss Score
3.82
Exon sequences
Seq C1 exon
GTCTTTCATAGCGAAAAGGTCCTGATGAAAAGATCATGGAGGGAAGCTGAAGCCTTCTGTGAGGAGTTTGGAGCTCACCTCGCAAGTTTTGCCCACATAGAGGAAGAAAACTTCGTGAATAAGCTTCTACACTCAAAATTTAATTG
Seq A exon
ATGCACCCTGGCTCTTCTATCAGAATGCCGAGTACCTCTTCCACACCCATCCTGCCGAGTGGGCCACCTTTGAGTTTGTCTGCGGCTGGCTGCGAAGTGATTTCCTCACGATTTATTCTGCTCAGGAGCAAGAATTCATCCACAGCAAAATCAGAGCG
Seq C2 exon
CTATCAAAGTACGGGGCGAATTGGTGGATCGGACTTGAAGATAGAAGAGCTGGAGATCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(36.0=81.6)
A:
PF0005916=Lectin_C=PU(32.4=67.9)
C2:
PF0005916=Lectin_C=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCATAGCGAAAAGGTCCTGA
R:
TGAATTTGATCTCCAGCTCTTCT
Band lengths:
210-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]