HsaEX6016183 @ hg19
Exon Skipping
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:9042]
Coordinates
chr2:160826659-160833231:-
Coord C1 exon
chr2:160833196-160833231
Coord A exon
chr2:160832579-160832736
Coord C2 exon
chr2:160826659-160826723
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCACTGTTTCTTTTTCAGATG
3' ss Score
13.57
5' ss Seq
GCGGTACTT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATGTGAAACCCAAGATTCCGTTCTGGTACCAGTACG
Seq A exon
ATGTACCCTGGCTCTTTTATCAGGATGCAGAATACCTTTTTCATACCTTTGCCTCAGAATGGTTGAACTTTGAGTTTGTCTGTAGCTGGCTGCACAGTGATCTTCTCACAATTCATTCTGCACATGAGCAAGAATTCATCCACAGCAAAATAAAAGCG
Seq C2 exon
CTATCAAAGTATGGTGCAAGTTGGTGGATTGGACTTCAAGAAGAAAGAGCCAATGATGAATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-'20-23,'20-22,21-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(31.8=66.0)
C2:
PF0005916=Lectin_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCCAAGATTCCGTTCTGG
R:
CGAAATTCATCATTGGCTCTTTCT
Band lengths:
98-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)