MmuEX6101527 @ mm9
Exon Skipping
Gene
ENSMUSG00000054580 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
Coordinates
chr2:60282188-60286349:-
Coord C1 exon
chr2:60286314-60286349
Coord A exon
chr2:60285440-60285597
Coord C2 exon
chr2:60282188-60282252
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATCACACGGTTTCCTTGCAGATG
3' ss Score
10.57
5' ss Seq
GGGGTACAC
5' ss Score
0.38
Exon sequences
Seq C1 exon
ATGTGAGACCCAAGTTTCCAGACTGGTACCAGTACG
Seq A exon
ATGCGCCGTGGCTCTTCTATCAGAACGCCGAGTACCTCTTCCACACCCACCCAGCGGAGTGGGCCACCTTTGAGTTTGTCTGCGGCTGGCTGCGAAGTGACTTCCTCACAATTTATTCTGCTCAGGAGCAAGAATTCATCCACAGCAAAATCAAAGGG
Seq C2 exon
CTGACAAAGTATGGTGTGAAGTGGTGGATCGGACTTGAAGAAGGAGGAGCCAGAGATCAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054580-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(32.4=67.9)
C2:
PF0005916=Lectin_C=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACCCAAGTTTCCAGAC
R:
TGAATTTGATCTCTGGCTCCTCC
Band lengths:
100-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: