GgaEX6042620 @ galGal3
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
NA
Coordinates
chr7:23439695-23441546:+
Coord C1 exon
chr7:23439695-23439730
Coord A exon
chr7:23440233-23440390
Coord C2 exon
chr7:23441529-23441546
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGACTCTTCTCATCTTCTAGAAC
3' ss Score
10.33
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGTTAAACCAAAAAATCCAGATTGGTACATAGCTG
Seq A exon
AACTGCCATGGTCGTACTACCAAGGAGCAGAGTATCTTTTTCATGTGAATCCTACAGACTGGGACACCTATGAGTTCATTTGTGTCTGGCTTCGTAGTGAAATGGCAACAATACATTCTGCTGATGAGCAAGCATTTATTGAAAATAAAATTAAGAAG
Seq C2 exon
TCAGGAGGGAGTAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'17-20,'17-19,18-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(32.4=67.9)
C2:
PF0005916=Lectin_C=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]