DreEX6090828 @ danRer10
Exon Skipping
Gene
ENSDARG00000077474 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr11:11091542-11095418:+
Coord C1 exon
chr11:11091542-11091577
Coord A exon
chr11:11094657-11094817
Coord C2 exon
chr11:11095363-11095418
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTGTTTATGCTGCAGAAC
3' ss Score
8.13
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTGTGGAGCTGGTCAAGCCATACTGGTACAGCGACC
Seq A exon
AACATGCACCATGGTTCTTTTTCCACGAAGCTGAATATTACTTTGCCAGTAAGCAGTTTCCCTGGCAGTCTGTCTCTTTCACCTGCAAGATGATGGGCGCTGATCTGCTCTCTATCCACTCTAGTGAAGAACTGGACTTTGTCAAAGGACACATTACTAAG
Seq C2 exon
GACTCTGAATATTGGTGGATTGGTTTGTCTGCTAACAGTGGCCACAACGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077474-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(34.0=66.7)
C2:
PF0005916=Lectin_C=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]