GgaEX6042620 @ galGal4
Exon Skipping
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21351121-21353195:+
Coord C1 exon
chr7:21351121-21351156
Coord A exon
chr7:21351659-21351816
Coord C2 exon
chr7:21353131-21353195
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGACTCTTCTCATCTTCTAGAAC
3' ss Score
10.33
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGTTAAACCAAAAAATCCAGATTGGTACATAGCTG
Seq A exon
AACTGCCATGGTCGTACTACCAAGGAGCAGAGTATCTTTTTCATGTGAATCCTACAGACTGGGACACCTATGAGTTCATTTGTGTCTGGCTTCGTAGTGAAATGGCAACAATACATTCTGCTGATGAGCAAGCATTTATTGAAAATAAAATTAAGAAG
Seq C2 exon
CTGTCGGATAGTGACGTTCACTGGTGGATTGGATTGCACGCAGAAAGCATCAGCAATGAATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(32.4=67.9)
C2:
PF0005916=Lectin_C=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATCCAGATTGGTACATAGCTG
R:
CGAAATTCATTGCTGATGCTTTCTG
Band lengths:
90-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]