RnoINT0114497 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2078072-2078473:+
Coord C1 exon
chr12:2078072-2078181
Coord A exon
chr12:2078182-2078317
Coord C2 exon
chr12:2078318-2078473
Length
136 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TTACTCAGACCCCCACTCAGGAG
3' ss Score
0.98
Exon sequences
Seq C1 exon
GCTTGCAAGGTGGCCCTCGTTCTGACTTTGACATGGCCTATGAACGTGGCCGGATATCTGTTTCCCTTCAAGAAGAGGCCTCTGGAGGCCCTCAGACAGCATCCCCTAGG
Seq A exon
GTGAGGCCTTCTCTTTTCTTCCATCCCACCACAGCCTCCCTTCAGAGCCCTGGCCAGTTGGCAAGTCACTTGAAAAGGTCAGTTGGGAGGGCACACAGGAAGTCACAAGTCCTGCCTTACTCAGACCCCCACTCAG
Seq C2 exon
GAGCTCCGGGAGCAGCCAGCAGGCGCCTGTGAATATAGCTTCTGTGAGGATGAGTCAGCCACAGGTGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCGAAGAGAGAACTAGCCAAGCTGATGCGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCGTTCTGACTTTGAC
R:
CAATCCGCATCAGCTTGGCTA
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]