GgaINT0004575 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60652130-60652504:+
Coord C1 exon
chrUn_random:60652130-60652236
Coord A exon
chrUn_random:60652237-60652315
Coord C2 exon
chrUn_random:60652316-60652504
Length
79 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
GCTGTCCCTTGTCCTCGCAGTCC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GCATCCAGAAGGGTCCCCGCTCTGACTTTGACATGGCCTACGAGCGCGGACGCATCTCAGTATCGCTGCAGGAGGACAGCACCAGCCCCCTGGCTGCCTTCTCTCGG
Seq A exon
GTAGGACTGGGTCCCCCACGTCCTCCTCAATCCACATCCACCCCAACGCCAACACCGGAGCTGTCCCTTGTCCTCGCAG
Seq C2 exon
TCCATCTCACACGAGCCCAAGGAACGTAAGTCGGTGACGGTGGAGGAGCAGCCATCGGGTATCTACAGGTACAGCTGTGAGGACGAGTCGGCCGCGGTGGACTGTCCCTTCGAGCCCTACCAGGGCCGTCAAACCAGCGCCATCTTCGAGGCTGCCAAGCAGGAGTTGGTCAAACTGATGAAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTCTGACTTTGACATGG
R:
CTCGTCCTCACAGCTGTACCT
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]