RnoINT0115577 @ rn6
Intron Retention
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89630810-89634760:-
Coord C1 exon
chr17:89634730-89634760
Coord A exon
chr17:89630859-89634729
Coord C2 exon
chr17:89630810-89630858
Length
3871 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTGTACTTTTTACTTGGAAGGCC
3' ss Score
4.06
Exon sequences
Seq C1 exon
AATTTCAGAGTTCTGAAGACTCTTCAATCAG
Seq A exon
GTAGGACTTCTGAATTTAAGAAATAATGTCAACTGATTATAGAATAGGATGAAAGGACACTTTGTGTTGCTGTGCCTTGTCCTTGGTTCTCGGTTGTATGTTTAAAACATGTTGTTTGTTATAACTATTGCCACACTTATGCAAAAGAACCTGTGCTTTTATGACATTTTTAACTAATTAAGCAATCACCATTCAGAGTTTGATTAACTATTCTATCAAGTCATAACTCATAAATATTCAGTCCATGATGTAAATATCAGACTACCTCATTATATAATGAATTATCTTGTTTCTTTTCATAGACTGAGAACCCCCTATATAGCACAGGGGCAGGAAATAGATACATATAAAGTTAATTCAGAAAATCATGATTTTATGTTAAATGTGCTTTATAGTTTGCCTAAGAAATAAAGGTATAATCCAAGAATGTATCTTAATGGTTTAAAAATGCACCAAAGGTTTGTCCAGCAGATCTCACTTAAGCATGGCTGTGAAATCACATGTGGTGCATAGCAATATGGAGAAATACTGTGTGAGAAATGCTTTACTGGAAGTGCAGAGTGACTGTATGTGCAGTGTGCATCTAGATCGAGGAGATTTAAATTTTACACACTTATTTCTCAGTTGGCCTTTGTTACAAACATTTATCTCAGACTAGGAAAATAAAATCTTCCTTTCCTTCTTTTCTTTTTTCTGCAACTTCACTCTTTTCTTATTTCATACTCCCACTCCTTTTTTTGCTTGTTTTCAAGACAGGGTTTCTCTGGGTAACCTTGGCTGTCCTGGAACTCACCAGGCTGGCTTCAATCTCTTGAAGAGATCCACCTACCTCTGCCTCATGAGTGCTGGGATTAAAGGTGTGCCCTACCACTGCCTAGATTAGCTTTACTTTGGTTCATGACTTCTTTTTATGCTCATAGAGGAAAAAAAGCACAAGAATTTCAAGATTTTAAGTAATCTTTGGAAACTAACAGACTGGCCTCTAGCTCATCAACCTGAACTTATACCACAAAGTGGCGGTTGTGATGGAGAATCTTAGACTTACAGATGCTAAAGTAGAGTATCTGGGAACAGCAAACCTGAAACTCATATTAATTAATTCTAAGGTCAGTTCTCTTATTTAACAGTTTATGGGTGAGTGTTTTAATACTAGAATTGATCAATGAGTCTAGTCATCCCAAAGTAAGAAGATGGGATTAGCAAATGATTGAAAAGGCAGAGGTTAAGGATGGAATAAATTGAGACAAATTTGGAACAATATTGGATTTGATTAAAAGGAACAGGAATTTAGAGCAGATATCAGGATCTTGGCTTTTATTTTAAGTCTGACAAAGATAATGCAAACTATAGACAAGATATTGGAAGGTTCCATGTAAGGGTGTGTGGACACTAGGGGTTCAAGGGTATTCTGAAAAATTTATTTCTTTTCTTTGCTTAGTACTAGGAATTGATAAAATTCCCTTTGAAAGTTGTTAAAAAATCACCCTATGACACTGGAGAATGTCCATATAGAATGTAGGGACGCCGCCTTATTTACTTCACCTCATTTTATAGAGAGTGAATTAAAGTCCCTTATGTACCCTGGGCAGGTGCACCCTCAATGGCAATTCTTTTCCCACTCACTGCTATACTTCTTATGTACATTCCTGGTCATGGTTGGCAAAAGGCTCTTGAACAGTTGGCCCCAGGCTACTGTGAGTTCATGAGTTCAATGGCCTTCTCATATCCACCTGACACTGTTGGTTATAGTTCTCACTAACCTCTGGCTCTTATAGTCTTTCTGTGCCCTATTGTTCCTTATTCTCTTAGTCTTTGGGGTAGGGATTGTGATTAAGATGTCTCATTTAAGTGCGAACACTCCACAGACACATCCTTTCTGCAATTTGACCATGTGTGAGTCTCTATATAAACCACTGTCTTCTGCAAACAGACACTTTTCTCATGGGAACTGAGAACTGCTCTTTTCTATGGGGCTAGAGACAAATATTTACAAGGAAGTCTGATACAATGCACTCTTAGCAGAATAACAGTAGTGGGTTCTCCTGTAGGGCCTATGAGCTTCCCAGCAATGCATCATTTGCTGGATTTACACATATATTTCTTTTCTGTGAGGAGAGCCTTCAATACAATCAGTAAGCAGTTTGTTTTCCCATAGCATTTGTAGCATTATTTTAAGCACAGCCATATTATCTTGCCTGGATGGTAATTATTGTTGCCCATAGTGTTCACAGCTGGGCAAGACTTTTACCTTTCTTACTTTGCTGCCTTCATAGGATATTCTAGTATGAAAGTTAGTCAGGAAGAAGGAAGCTTCCTAGTAAGTACCAGCTTGATTTCTTCAGTTTCTGTAACCACAGAATGTAGTTTTCCCTACGATCACTGCATATGGAGTCTTCAGCAATGGAGTCTTACATCCAGTTCTAGTGGGAAACCAAGATTAATGTCAATAGCTATATTGCTTTGGGGGTCTTCTGGGATACCAGGAGAAGAATTCCACACACAGAACTGGGATTTTTTGATATATTTTAACCTCTATACAACTCTATTAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACTCACACACACACAGAGCTGTATGCTGGAGGGAGGGATCAGTAGTTAAGACTCTTTCAGACGACCAGAGTCCTGGCATCCATGTGAGATGATCACACCTGCCTGTAACTCTAACTCTAGGGAATCTGTCACTCTCTTTTGGCTTCTGCTGGCACCTGTACTCATGTGCACATGCCAACACAAAGTTACTCATACCTACATGTAAACAAAACTAGTAAATTAAATGTTTAATATATGTATACATATTTAAGAAGTTAATCAAAGGATGCATTTCTATGTGGCTTTTGAACATACTTAGTGTTGGTCATTGCTCTTTTCATCCCCTCCTCTGCTCATCTCCCTCTCCCTTACTGAAAACTGTGGCTCCAGTTATTCCCTCTCCCTTTATAACTTCTGTGTTCTAGTACTATAATTTTTAATGTTACATTCTTTTTGTGAAAAAAGTTTCCAGTAATGACTGTAAACATATTCTTGGACTTTACAAATTTATCTCTCAACATTTTAAAATGTCTCGGGAACTCCTCTACTTTTTTTTTTTTTACAGGCAAAGAGAAGTAACAGATTTGAAATTGTTTTTAAAGGTTGTGTGTGATGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTTTTGCAGGTCTGGTGGATGCTAGAAGACCCCTGTAGAGGTGGAATCTCACGTCATTGTGAGCCACCTGGCATGAGTATTGAGAACAAACTTTGGGTCTCTGAAAAGCTCACACGTGCTCTTAACAAACCAGGGAGCTGTCTCCTCAACCCTGCAGTGGGTTCTCTTCAATAGACGTATTCCATAATGAGGAAGAAATGTACTACACCTGAATAATAAAGCTTGGTGTTTGATCCAGGATTAGAGGATGGAGAAAAGAGCTCATCATTGTAATGTGCTTTATGCTGTCAGATTAGTTTCATTTCTATGAATGAACCATTGATAGGAATTTTAGTTGTTTTCCTATACAATAGACAGTGTTTAAATGCAAAGTATTTCCAAGGCTCAGACAAAATATTGTCATGATATGAAACTATAAGTAATGTACCATCAAGCAGTTCTCAGATAAGGATAGGTGTAGGCAGGAATGGTTAACTAAAGATGGTTTAAACACTCAAGTCAAATTATGGTGACAAAGTAAAGAAGTATAATTTACTATGTAGAGAGCTGATCTCTTACAACAGCTGAGGATTCGTACTTACACACCTTGCTGTACTTTTTACTTGGAAG
Seq C2 exon
GCCTATCAATGAAGTGGATGCTGAAGTGACCTCATCTATGGCAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992:ENSRNOT00000052342:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]