RnoINT0118708 @ rn6
Intron Retention
Gene
ENSRNOG00000033266 | Prss30
Description
protease, serine, 30 [Source:RGD Symbol;Acc:735142]
Coordinates
chr10:13349384-13350547:-
Coord C1 exon
chr10:13350276-13350547
Coord A exon
chr10:13349545-13350275
Coord C2 exon
chr10:13349384-13349544
Length
731 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAGGCTTTTCTCTGGTGCAGAGC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GCCTCTGAACTCCAGTTTCTACCACGTGAAGGTTGGAGGACTGACACTTTCTCTTACGGAACCCCACTCAACCTTAGTGGCCGTGAGGAACATCTTTGTGTATCCCACCTACCTCTGGGAAGATGCGTCTAGCGGAGACATTGCTCTGCTGCGGCTGGACACTCCTCTGCAGCCCTCTCAGTTCTCTCCTGTCTGCCTCCCACAAGCCCAGGCTCCTCTCACCCCTGGGACTGTCTGCTGGGTAACAGGCTGGGGGGCTACCCACGAAAGAG
Seq A exon
GTAAGGGATTATGTCCATACCCAGTCCCTACTCCTGCCCAGGGCAAGACCTGTCTGGGAGACATGCTGCCAAGGGGCCCACTCATGGTGGATTTGGGGAGCCCAGCCAGTGTCCAGGTTTCTGCCTACTGCAGAAACGGGTAAACTGAGGTTCCGCAACCATGAGATTATGGGAGCTTACAGGGGCAGACAGGACTCGAACCCTGTTCCCTGACTCTGTTTTCTGGTTTGAGGACATGGGAGGGACTAGAGAACAGAAAGAAGGAGGCTGTCTTAGTCAATCTAGTTCTGCATGAACATCAGGACCAAGAAGCAAGTCGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAGAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGACACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCCCTCTTATAGAACCCAGGACCACCAGCCCAGGGACGGCACCACCCACAATGTGCTGGGCACTCCCCACTTGATCACTAGTTGAGAAAATGCCCTACAGCTATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCATACAGTACAGAGACCCAGGTTGTCTGCATGATGGGCCTCAGGCTGTACTCAGACCAGGCTTTTCTCTGGTGCAG
Seq C2 exon
AGCTGGCGAGTGTCCTCCAGGAGTTAGCTGTGCCTCTCTTGGACTCAGAGGACTGTGAAAGGATGTACCACATCGGGGAGACCAGCCTGTCAGGGAAGAGAGTCATCCAGTCAGACATGCTCTGTGCCGGCTTTGTAGAAGGCCAGAAAGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033266:ENSRNOT00000034340:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAAGGTTGGAGGACTGA
R:
GACTCTCTTCCCTGACAGGCT
Band lengths:
353-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]