BtaINT0118729 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040394 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr25:2127690-2128699:-
Coord C1 exon
chr25:2128428-2128699
Coord A exon
chr25:2127860-2128427
Coord C2 exon
chr25:2127690-2127859
Length
568 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
CTGGTATCTCCCCTCCGCAGACA
3' ss Score
10.37
Exon sequences
Seq C1 exon
CACCTCTGAAACATCCCTGTACCAGGTCCTGCTGGGGGTGCTGCAGCTGGCGAGGCCAGGGCCACACGCCGTGTATGCCCGGGTGAAGCGGGTCGAGAGCAACCCCAAGTACCAAGGCATGGCCTCTAGCGCCGATGTGGCCCTGGTGGAGTTGGAGGCACCTGTGACCTTCACCAACTACATCCTCCCCGTGTGTGTGCCTGACCCCTCAGTCGTCTTTGAGTCGGGCATGAAGTGCTGGGTCACCGGCTGGGGCACCCCCAGTGAACAAG
Seq A exon
GTACTAAGGGCAGGGCAGGGAGAGAACAGGTGGCGGGCCTAGAGAAGGCAGCCTGGGGGCCGCCCTGAACCAACCATCTTCTGTTCAAACTGCCGCACGTGTGTTAGTCGCTCAGTCGTGTCTGGCTCTGTGACCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCACGGGGTTCTCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCTGGTCTCCCGCACTGCAGATAGATTCTTTACCGTCTGAGCCACCAGGAAGGCCCACAAGATCTCTACTCAAGTGGGTGGAGTAGGTATGGGAAAGGGCAGCAGACACAGGAGCAGGGGCCACAGGGAACAGAAAGAGCCCAGCCTGGTGGTGGGGGGTGGGAAGAAGGAACTCTGTCCTACAAAGCCTCCAGCCAGAAGAGAAGATCTAAAAACACAAGAGAAAAGCAGGTGGGATAGAGCTGCGGTTCTTGAGAACCAGGGCCTGGGGCCCTCGGTGAGAATGTCCCCTGAGCCGCACCTGGTATCTCCCCTCCGCAG
Seq C2 exon
ACAGCCTGCCCAAACCCCGGACCCTGCAGAAGCTTGCCGTGCCCATCATCAGCACGCCCAAGTGCAACCTGCTCTACAGCAAGGATGCAGAGTCCGGCTTCCAGCCCAGAACCATCAAGGACGACATGCTGTGTGCGGGCTTCGCTGAGGGCAAGAGGGACGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040394:ENSBTAT00000027417:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACCCCAAGTACCAAGG
R:
CTTGCAGGCGTCCCTCTTG
Band lengths:
346-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]