RnoINT0118697 @ rn6
Intron Retention
Gene
ENSRNOG00000005336 | Prss27
Description
serine protease 27 [Source:RGD Symbol;Acc:1303256]
Coordinates
chr10:13416589-13417359:+
Coord C1 exon
chr10:13416589-13416860
Coord A exon
chr10:13416861-13417189
Coord C2 exon
chr10:13417190-13417359
Length
329 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGCTGCCTTTCCCTCCCCAGACC
3' ss Score
11.15
Exon sequences
Seq C1 exon
CACATCAGACATATCCATATACCAGGTCCTGCTGGGGGCACTGAAGCTGCAACAGCCAGGACCACATGCCCTGTATGTCCCCGTGAAGCGGGTGAAAAGCCATCCTGAGTACCAAGGCATGGCTTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGTGCCTGTGACCTTCACCAAATACATCCTTCCCGTGTGCCTGCCTGACCCTTCGGTCGTTTTCAAGTCGGGCATGAACTGCTGGGTCACCGGCTGGGGCAGTCCCAGTGAGCAAG
Seq A exon
GTGAGGGGGACTGAGCTAGGGGAAGAAGGGAGATAAGTCTGAAGAAGGGCCAGGACAGCTTTCCTGTTGATGCTGATATGCATGGTTTCTATTCACAGGGGTGGGTGGGTATGAGTGGAGCAGGAGCTGCAGGAGAACTGCTGTGCACATGGGAGACAGGAGAGGGAGGCATGCAGGCCTGGGTCTACTACTGAGGGAAGAAACAGTCCCATTAAGTTTTGAGGAAACCCAGGGAGGGGCAATGAGCTGTGGTTCTTGAGAGGATCCTGAGGATCTTGAGGATCCTGACTAAGACTGTCCAGAGCTGCAGGCTGCCTTTCCCTCCCCAG
Seq C2 exon
ACCGGCTACCCAACCCACGGATCCTGCAGAAACTTGCTGTGCCTCTCATTGACACGCCCAAGTGCAACCTTCTGTACAGCAAGGATGCTGAGGCTGACATCCAGCTCAAAACCATCAAGGACGACATGCTCTGTGCAGGCTTTGCAGAGGGCAAGAAGGACGCCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005336:ENSRNOT00000007392:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGAAAAGCCATCCTGAG
R:
CTTACAGGCGTCCTTCTTGCC
Band lengths:
354-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]