DreINT0008637 @ danRer10
Intron Retention
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37128177-37131168:-
Coord C1 exon
chr15:37130897-37131168
Coord A exon
chr15:37128314-37130896
Coord C2 exon
chr15:37128177-37128313
Length
2583 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
GTTTTATGTATGTGTTGTAGGAA
3' ss Score
9.08
Exon sequences
Seq C1 exon
ATACAAGATGACATCCAGCTGGATTACGTACAGTGGGCTGCGGGACCAGAACACCCATGACAAATCGGTTCAAATGCGAGATTTGAAGACCATCATCACCCACCCAAACTACAACGATTTGACCAATGACTATGATATCTCTCTCCTCGAACTGAGCCAGCCGCTGAACTTCAGCAACACTGTGCATCCCATCTGCCTTCCAGCGACGAGCCACGTCTTCACAGCCGGCAGCTCCTGCTTTGTGACGGGCTGGGGGACGCTTCGAGAGGGAG
Seq A exon
GTCAGACAGCTTGTGCACCTCAGGGCTGATCTTTGCATTTGGAGATCCGCTTTTACAAATCTTTTGAAAATTTGCCTCTTAAGTTTGACATTTTTTCAATCCCTTGTCTCAGTCAGAATGTTTGCATGGACAACAGGTTTCTGATATTAATGAGATTAAAGCGGTGGTCCAGAGTTTATTTTTAAGGTTGTGCTTATAAGATGAAAAACAATGTGTGCTCATGCTTAATTTGTAAAAAAAAAAAAAAATCACATTTTTTTTTCTTACTTTAAGTATATACAGCTACACGGCTAACATGACTAAAATGACTATCATATTTCATGGTTCCACCAAAAGCCTGCCCTCAAAAGACTCTGATTGGTCATCTAACATCACTACTTCACCAGGAAGCATCACGGCTCTACCAGCACGCGCTTTGCCATTGTGTAAATACTGTCAGTCAGAGTAGTTGTTAGTCGTATGAGTTTGAGCCTGAATCAGACAAAAAAATGAAGAGGACACAGCTGAACCTCATGCCTGCTCTCTAAAATAAAATCTGACAAATGTCACATATATTCAGAATAACCATGTATAAGTAATATAAAACGTTCTGATTTCTTTTGTGAGTTTGTTATTTGAGATGTAGAACGCAGAGAAAACGTTCGCATAGAGAGACACTGCAGTGCTGGTGAAGATTGTGGGTGTTTACAGCGGTTTGACTGATAAATATGAATTTATAGCTAAATTGTTAGCTGTGACAATCAGCATTTCCCATTGCTTATATCCTTTGCGTTCTTGCTATAACATAGCATTAAAGGTGCAGTAGGTGATCTTCCACAATGCTAACAGTTTAGCATAAATCTCTGAGTCACAGTCCCTCCCCTGCTGTCTAGAGCCACGCCTCCTGAAACAGGAGCACGGCAAAAGAACCCTCTCTCATGTGTTAAAAGCGACTAGTGCTTGTCCGGCGGTGTCCAAGCCAAACCAACATGCTATTTCAGAGCAAATATTTAGAGTCGCATGGTAAACGATATAGGGAGAGACTAGGCGGAATAGTGGTACTTACTTGTGTTTTGTTGTTAAACTAATTAAAATCTACATCATCGATGCCGTAAAAGTTCCCTTATGAAACTGAAAATAGTCATATCAATCTTTGTCATCGGAAGATTTTAGTGGCTGAACAACACTTTTGTGAAGATATAACCTATTTGTAACAACAACATCTACCGTTACATCAGCTTTGCGTGAAGCTAGAACAGTTTTAAAACAGAACATTACTTGTCTAAGAGAAATCCTTCAGACATAGTGTCATCCTTTCTCCAGCGTGCAAAGGTAACTCCAACATTAATTCAGGTTTTTAAAAAGTGTTCATCATGTTTTTACCGCTCGCGCACGTGCTCTCTCTCTCTCACTTTGTCTATTATGGTTGGAGAGCTGCTTCTATGAGCTCTTCTAAAACTCAGAGATATTCTGGAAGCTCTCCTTTGTCAAATGTTAGAGCTATATATTTTTTAAAAGAATTCTCTGGAACATAACTAAAATTAAATTGTAAGCACTTCTCTCTTTGTGTTGTGTCCTTTGGAAGCCCAAATACAGAAACCGAACAAGCTCTATGGAAATAGCAGCATTTAGACGCCATTTTAGCTTTCTCTTCTATAACATTATAGCACCTCTGGCCACACCCATTCATTGCTCTGGGTATATGCGCATAACCTGAAGGGTTTATTATCTCTTATACACTGGTTTGTAGATGTTTTGAATAGTTTGTCATTGTAATTCATGGTAACTGTTAATATTTATTTTTTATTTTTTTGTCTATGAGACTCACACGACATGTATACTGCCCAATCTTGGCCAGGACACTCATGTTAAATAGATTTTTAATCTCAATGTGTCTTTCCTGGTAAAATAAAGGTTATAATAATAATAATATGATCTCATTAACCCTGATGTAGTTTTTGTAGTCCCCAAACTTCATTCGCTGTAGGCTTTGCTATGCTAACTCTGTAAAAGTCAATGCGTTGAACTTTGAACTTGCGTATTACATTCAGAGATGTTGTTTATGTTCACACATCTACATTATACATCAATTAAAGTCTAAAATACGATATTGTAGTGGACCACCCCTTTAATACAATATTTTAAGAATCAACCATGTATGTTAGGAATGTTTACATGGACTGCAGTATCCTGATATAAACATTATTAAGACAATACTCTGATTAATAATCTACAATGCAAACTCAATAGGGTTACATAGAAAGCCAATAGCAGTATTCTAATATTAATTAGATGAACACCAAGTAAACAAACTATCCACATTTTTATGTTTGCATATATAGCATGGCAAATCATTAACTGCATTGGAAGGTTTTCAACGTGAAAAATCATAATTAACATTGACAGAATAGGGTAAATAATGTATTACCGTTGTCCATGTGAACATATTCAGCTTTGCTTTTAGCAGAACGTTCATTAAGAGATTGAGTTATAATTGTAAGCTAATTCTGATCAATGTTTTAAACACACACCCTTAATGAGAGCAGATTCTCTTTGGTATCAGAAACGTTCTCACAGGACTAATGTTTTATGTATGTGTTGTAG
Seq C2 exon
GAAGCGCGGCTCAAATCCTTCAGAAAGCAGAAGTAAAGGTGATTAATGATACAGTGTGCAACATGGTGACCGAAGGTCAGGTGACCTCTAGAATGATGTGCAGCGGCTACCTTTCTGGAGGTGTGGATGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088:ENSDART00000165867:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]