HsaINT0132961 @ hg38
Intron Retention
Gene
ENSG00000172382 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr16:2713529-2714336:-
Coord C1 exon
chr16:2714065-2714336
Coord A exon
chr16:2713699-2714064
Coord C2 exon
chr16:2713529-2713698
Length
366 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTGTTCCGCCCCTCTCCAGACC
3' ss Score
8.94
Exon sequences
Seq C1 exon
CACCTCTGAGACGTCCCTGTACCAGGTCCTGCTGGGGGCAAGGCAGCTAGTGCAGCCGGGACCACACGCTATGTATGCCCGGGTGAGGCAGGTGGAGAGCAACCCCCTGTACCAGGGCACGGCCTCCAGCGCTGACGTGGCCCTGGTGGAGCTGGAGGCACCAGTGCCCTTCACCAATTACATCCTCCCCGTGTGCCTGCCTGACCCCTCGGTGATCTTTGAGACGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAGGAAG
Seq A exon
GTAAGGGGACAGGGCTGGGAAAGAATGGGGGATATGCCTCAAGAAGGCCCAGGACGGCTTGGGGACCACTCTGAACCCACAATCTTCCTGTTGCTATATTAATACATACACACGGTCTCTGTTCACACAGGTGGGGCCGAGGGGAGCAGCAGCAGACCCAGAAGGAAGAGGGGGTGAAGGGAGAGGGGGACAGAAAGGGCCCAGCCTGCTGCCTGGAAGGAGGGAGGATGTCTGCCCCACAGTGCCCTAAGCCAGAGATGGTCTAAACATGAGGAAACGACAGGCAGGATGGAGTGGTGGTTCCCGGGGCCGTGGGTTCTTGATGAGGAAGTCCGTTGAGCCCTGGGCTGTTCCGCCCCTCTCCAG
Seq C2 exon
ACCTCCTGCCCGAACCGCGGATCCTGCAGAAACTCGCTGTGCCCATCATCGACACACCCAAGTGCAACCTGCTCTACAGCAAAGACACCGAGTTTGGCTACCAACCCAAAACCATCAAGAATGACATGCTGTGCGCCGGCTTCGAGGAGGGCAAGAAGGATGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172382:ENST00000302641:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGCAACCCCCTGTA
R:
ATCCTTCTTGCCCTCCTCGAA
Band lengths:
342-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development